| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3854 |
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| Symbol | |
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| ID | 8254988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 4624309 |
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| End bp | 4625355 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644937518 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003094107 |
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| Protein GI | 255533735 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGATT CTACCACCCG ATTAAATAAA TACATTAGTG AAAGCGGCCT ATGCTCCAGA
AGGGCAGCCG ACAGGTACAT AGAGCAGGGA AATGTATACA TCAACGGCAA AAAAGCCAAG
GTAGGTGATA AAGTGTTTTT TGGGGATATT GTAACGGTTA ACGGACAAAC TATAGACCCT
AAGGAAGTTG AAAATTCTGT TTTAATTGCA TATAACAAGC CTGTTGGCAT TACCAGTACC
ACCGAAGCCG GGGTAAAAGG AAATATTGTA GATCATGTTA ACCATAGCGA ACGCGTGTTC
CCCATTGGCC GTTTGGATAA AGATTCACAG GGACTGATAT TTCTGACCAA CAATGGCGAC
CTGGTAAATA AAATACTCCG GGCAGGTAAC AACCACGAAA AGGAATACGT AGTAACCGTA
AACAAACCCC TTACAGATCA GTTTATAACC GGAATGGCTA AAGGTGTTCC TGTTTTGGGT
GTAATGACCA AAAAATGTAA GGTAGTTAAA GAAAGCCCGC TCATATTCAA AATCACATTG
ATCCAGGGCC TGAACAGGCA GATCAGGAGA ATGTGTGAGT ATTTTGGCTA CGAAGTAACC
AAGCTGGAGC GTGTAAGGAT CATGAACATT CCATTAAAAG GCATTCCTTT AGGAGAATGG
CGTGAGCTCA CACCAGAAGA ACTGACTGGA ATATTTAATA TGGTTGCCAA ATCAAGTGCG
GAAGCAGATG CAACACCCAA AAGAGTAAGC AAAAAACCTA AGACACCAAA AGAGGAGGAT
TTTTTAGAAA ATGTGACCCC TGGGAGATCT TCAGGAAGAA ATGCTAAACC CAAAAGTAAA
GGAAAAGCTG CCCCAGCTTC AGTAAGACGG GAAGATCGAC CAGCTGGAGG CAAGGGCAAA
TCCGGCCCTA AAACTTCCGC TGCTTTTAAA ACAACAGGGG CGGCAGGCGA CTGGAACAAA
AGTGGCGGTC CGTCCAAAAG ACCCGTCAAA CCAACAAAGG GCCGCTCCGG GGCCCCTGCT
GCCAAAACGA GAAGCCCTAA ACGATAG
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| Protein sequence | MSDSTTRLNK YISESGLCSR RAADRYIEQG NVYINGKKAK VGDKVFFGDI VTVNGQTIDP
KEVENSVLIA YNKPVGITST TEAGVKGNIV DHVNHSERVF PIGRLDKDSQ GLIFLTNNGD
LVNKILRAGN NHEKEYVVTV NKPLTDQFIT GMAKGVPVLG VMTKKCKVVK ESPLIFKITL
IQGLNRQIRR MCEYFGYEVT KLERVRIMNI PLKGIPLGEW RELTPEELTG IFNMVAKSSA
EADATPKRVS KKPKTPKEED FLENVTPGRS SGRNAKPKSK GKAAPASVRR EDRPAGGKGK
SGPKTSAAFK TTGAAGDWNK SGGPSKRPVK PTKGRSGAPA AKTRSPKR
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