| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3850 |
|---|
| Symbol | |
|---|
| ID | 8254984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4619532 |
|---|
| End bp | 4620359 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644937514 |
|---|
| Product | helix-turn-helix- domain containing protein AraC type |
|---|
| Protein accession | YP_003094103 |
|---|
| Protein GI | 255533731 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.427371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAAC AAAATATGCA CCAGCAGGTA GAGCTGGAAT ACCTCAAAAC TGATCACTGC
CCACTAGGTG ACCGGCAGTA TAGTTTCTTT GAAATGGTGT ACCTCATTTC TGGTAAGGGC
ACCGTCTGTA TCAATGGCAA CCGCATGGCC TATCGTGACG GGAACCTATT ATTACTCACG
CCCAACGACC GCCATACTTT TGAAATAACT GAAGTAACAG AGTTCCTGCT GATCCGGTTT
AGTGATAGTT ACGTTCGGAG TTATCCCTGG AAAAGTATTC ACCACCTGGA ATGTCTGCTC
TTCTATGCCA CACATCTGTC GGGTTGCGTA ATGCGCTGCA AGGACGACAG CCGTCTGGTT
GAGATGATTG TCGAATCGCT ACTGTTTGGG ATGAAGCTTG GAGGTGTTTA CCAGCAAGAT
CTGGACATGA ACCTGGTAAA CGCACTGATT GTTATTGCAG CCAGAAACAT TTCAAAGATA
AGGCCTGAAA ACGTCCGTAC CAATACAGAT AAGCGCATAC TCCAGATCAT CAATTATATC
GAGCGCCATA TTTTTATGCC AGATCAACTG ACTGCGGCTG CAATAAGTCA GACTTTTGGG
ATTTCACAGG CTTACCTGGG TGTTTATTTC AAGAAGCAAT GCGGAGAAAC TATCCAGCAG
TTCATTACCA GCTACAGGAT CCGGCTGATC GAATGGCGGT TAAAGTTCAG CGATCTCCGA
ATCAATGAAC TTGCTGATGA ATTCGGTTTT GCCGATGGGA GTCACCTGAA CAAGTTCTTT
AAGAAGCAGA AAGGTATAAG TTTGACTGGT TACAGGCAGA ATTTATGA
|
|---|
| Protein sequence | MVKQNMHQQV ELEYLKTDHC PLGDRQYSFF EMVYLISGKG TVCINGNRMA YRDGNLLLLT
PNDRHTFEIT EVTEFLLIRF SDSYVRSYPW KSIHHLECLL FYATHLSGCV MRCKDDSRLV
EMIVESLLFG MKLGGVYQQD LDMNLVNALI VIAARNISKI RPENVRTNTD KRILQIINYI
ERHIFMPDQL TAAAISQTFG ISQAYLGVYF KKQCGETIQQ FITSYRIRLI EWRLKFSDLR
INELADEFGF ADGSHLNKFF KKQKGISLTG YRQNL
|
|---|
| |