Gene Phep_3846 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3846 
Symbol 
ID8254980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand+ 
Start bp4616591 
End bp4617283 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content42% 
IMG OID644937510 
ProductHelix-turn-helix type 11 domain protein 
Protein accessionYP_003094099 
Protein GI255533727 
COG category[K] Transcription 
COG ID[COG2378] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.80209 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGAA TTGACCGGCT GTTTGGCATA CTTTTATTAC TCCAAACCAA GAAATACATT 
ACAGCAGATC AAATTGCTGA TCAGTTCCAG ATCAGTGTAC GAACGGTATA CCGCGACATT 
AAGGCCCTCC TGGAGCAGGG CGTTCCTATC AGCTTTGAAC AACCCAAAGG CTATTTTATT 
GTACAAGGTT ACTTTCTTCC ACCGGTTTCT TTTTCCCAGG ATGAGGCCAA TGCCTTGCTC 
ATCATGGAGC GTCTGGTATC GCGTTTTGCA GACAGGTCTA TTTTGGCCAA TTACACTACG 
GCACTGAACA AGGTGAAGGC AGTTTTAAAA CATGCTCAAA GGGAAAAACT TGAACTCCTG 
AATGAAAGTA TAAAGTTTCA GCTGAACCAT GAAATGCTGA ACGATGAGTT TGACCACCTG 
TCCACCCTTC AAAATGCCAT TTCAGGCCGC TGTATAATCG AAATCGATTA CCAGAACAAT 
AACGGTGAAA GCAGTAAAAG GGAACTTGAA GCTATCGGAC TTGTATTTTA TGCCTATAAC 
TGGCACCTTA TTGCCTGGTG CCACCTGCGC AATGAATACC GCGATTTCAG GGTATCACGT 
ATAGTAAAAG TCAGAAACCT TGATATCCCT TTCCGGAAAA AAGACCATAT AAAAATTGGG 
GATTATATGA AGATGCTACC TGTTGACTAT TAA
 
Protein sequence
MNRIDRLFGI LLLLQTKKYI TADQIADQFQ ISVRTVYRDI KALLEQGVPI SFEQPKGYFI 
VQGYFLPPVS FSQDEANALL IMERLVSRFA DRSILANYTT ALNKVKAVLK HAQREKLELL 
NESIKFQLNH EMLNDEFDHL STLQNAISGR CIIEIDYQNN NGESSKRELE AIGLVFYAYN 
WHLIAWCHLR NEYRDFRVSR IVKVRNLDIP FRKKDHIKIG DYMKMLPVDY