| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3840 |
|---|
| Symbol | |
|---|
| ID | 8254974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4611133 |
|---|
| End bp | 4612185 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644937504 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003094093 |
|---|
| Protein GI | 255533721 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.745152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGAA AAGTATTTTT ATTGATTTTG CTGAGCTATA TACCTGCAGT ACGGGCGCAG
CAGCCTGTGC AGGGATATGT AGATAGTAAT CTCGTGAAAA CGCTTTTTTT TGCCGGCCTG
CGTGATAAGT TGAACGAGGA TTATAGCAGG GCCAATGAAA GTTTTACCAA AATACTGGTG
CTAGACCCTA ACAATGCAGC CGTCCACTAT GAAATTGCGG TAATGAACTA CCGGCAGAAT
AAACTTTTTG AAGCTGAAAT GGCCATAAAA AAAGCCCTTG TTGCTGATGG TAACAATGTG
TGGTACTGGA TGCTGATGGC TGAGTTGTAT AAACGAAAGG GCGATATGGA AGCTCTGGTA
GAGGTTCTGA ACCAGATGAT CAGGCTTGCA CCGGATAAGG AGGCCTATTA TTACGACCGG
TCTAACGCCT GGCTACTGGC TGGGAATACA GACGCCGCTA TGAAAGGTTA TGATGAGCTG
GAAAAAAAAT TCGGCAATTC TGAAGCACTG AACCATGCCA GGCAACGGGT AACGATGGAA
AAGGATGATA CTGCAGGTGG ACAAAATGAG GGCCATCAGG CAGCAGCCTC GCTGAGCCCG
GAACAAACAA TGCTGGTACT TGGCGAAAAA TTGTACAGGC AGGGCGATCT GAAAGGGGCA
ATGGCCCAGT TTAAATCAAT ACTTAAAAAT ACCGATCAGA TTTATATGGC CTGGGAACGT
GCAATACATA TTGAAGTGGT ACTGGGTTTA TATGCCGAGG CTTTAAAAAC AGCAGATGAA
GCTTTATCTT TATATCCTAG TCAGGCAGTT CTGTATTATT ATAAGGCTGT AGCCCTGCAA
CATATAAGTA ATTATGCGGA AGCCCTGACA AATATCGAAA CTGCCTTGCA GCTGGATGAA
GGAAATGCGC TTTATATGGA GCTTTATGGC GATGTTTTGT TTTTGAAAGG AGAGCCTGCC
CAGGCATTGC TGCAATGGAA AAAGTCGAAA GCGGCAGGGA ACAGTTCTGA AAAATTAAAC
AAAAAGATCA ATGAACGGAA GTATTTGGAA TAA
|
|---|
| Protein sequence | MKGKVFLLIL LSYIPAVRAQ QPVQGYVDSN LVKTLFFAGL RDKLNEDYSR ANESFTKILV
LDPNNAAVHY EIAVMNYRQN KLFEAEMAIK KALVADGNNV WYWMLMAELY KRKGDMEALV
EVLNQMIRLA PDKEAYYYDR SNAWLLAGNT DAAMKGYDEL EKKFGNSEAL NHARQRVTME
KDDTAGGQNE GHQAAASLSP EQTMLVLGEK LYRQGDLKGA MAQFKSILKN TDQIYMAWER
AIHIEVVLGL YAEALKTADE ALSLYPSQAV LYYYKAVALQ HISNYAEALT NIETALQLDE
GNALYMELYG DVLFLKGEPA QALLQWKKSK AAGNSSEKLN KKINERKYLE
|
|---|
| |