Gene Phep_3799 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3799 
Symbol 
ID8254933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4563188 
End bp4566847 
Gene Length3660 bp 
Protein Length1219 aa 
Translation table11 
GC content46% 
IMG OID644937463 
Productmethionine synthase 
Protein accessionYP_003094052 
Protein GI255533680 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATCA GAAAAGAGTT AGAAAAACGT ATCCTGATCA TTGATGGTGC AATGGGCACC 
ATGATACAAC GTTACACCTT AACTGAAGAG GATTTCAGAG GTGAACGCTT CAAAGATCAC
CCCTGTGATG TAAAAGGGAA CAATGACATG CTGAGCATCA CACGCCCGGA TGTCATTAAA
GAAATCCATA CTGAGTATTT AAAAGCCGGT ACGGACATTA TTGAAACCAA TACTTTCAGT
ACCCAGCGCA TTTCCCTGGC CGACTACCAG ATGGAACCGC TTGCGTATGA GATGAGTTTT
GAAGGGGCAA AAATTGCCAA AGAGGCGGTA AACGAATTTA TGGCCGCCAA CCCCGACCGC
AAGTGTTTTG TGGCCGGAGC AGTGGGCCCA ACCAACAGAA CCCTCTCCAT TTCACCTGAC
GTAAATGATC CGGGTTTCAG GGCCATTACC TTTGATGAAC TGGTTGAAGC TTATGACGAA
CAGGTACGCG GATTGGTAGA TGGAGGTGCA GATTTGCTCC TTATTGAAAC CATTTTTGAT
ACGCTGAATG CCAAGGCTGC CATATTTTCA ATTAAGAAAT ACGAAGCCGA AATTGGCCGT
AAAATAGAGA TCATGATCTC TGGTACCATT ACTGATGCAT CGGGAAGAAC TTTATCTGGC
CAAACGGCCG AAGCTTTCCT GAATTCTGTA ATGCATGCCA ATCCACTGAG CATTGGCTTT
AACTGTGCCC TGGGTGCCAA AGACATGAGA CCCCATATTG AAGAACTTTC TGCCAAAGCA
GGATGTTATG TTTCGGCTTA TCCGAATGCA GGTTTGCCCA ATGAATTTGG TGCTTATGAC
GAAATGCCAC ATGAAACGGC CCACCTGGTG GAAGATTTTA TCCAGCATGG TTTTGTAAAC
ATTGTAGGTG GCTGCTGTGG TACCACACCA GAGCACATTG GTTGCATTGC CAAAAAAGCG
AAAAATGTAG CACCCCGCAA AATACCGCAT ATTGAACCTT ACCTGCGCTT AAGCGGGCTG
GAGCCGGTAA CCATTACGCC GGAAAGCATT TTTGTAAACA TCGGGGAAAG GACCAACATT
ACCGGATCAC CTAAATTCAG CAAGCTGATT TTGGGCGGCG ATTTTGAAGC AGCACTGGCT
GTAGCCCGTC AGCAGGTAGA AGGTGGTGCG CAGGTGATCG ATGTGAACAT GGATGAAGGG
ATGATCGATT CGGAAGCTTC GATGACAAAG TTCCTGAACC TGATCGCTTC TGAACCAGAT
ATTTCCAAAC TGCCCATCAT GGTCGACTCG TCTAAATGGA CAGTAATTGA AGCTGGCTTA
AAATGCCTGC AGGGCAAAGG GATTGTCAAC TCCATTTCAC TGAAAGAAGG AGAAGATAAA
TTCAGGGAAA GTGCCCGTAA GATCATGACT TATGGCGCTG CTGTAGTGGT AATGGCTTTT
GATGAGCTTG GCCAGGCAGA TAATTTTGAA AGAAGAAAAG AGATCTGTAA AAGATCTTAT
GACATACTGG TCGATGAAAT TGGCTTTCCG GCCCAGGATA TCATTTTTGA CCCGAACATC
CTTACCGTAG CTACAGGTTT GGAAGAACAC AATAATTATG CGGTCGATTT TATCAATGCC
ACCCGCTGGA TTAAAGAAAA CCTGCCTTAT GCAAAAGTAA GTGGCGGGGT TTCTAATATT
TCCTTTTCTT TCAGGGGTAA CAATACCGTA AGGGAAGCCA TGCATTCGGC ATTTTTATAC
CATGCCATCA AGGCAGGCCT GGACATGGGG ATTGTAAATG CAGGAATGCT GGAAGTTTAT
CAGGAAATTC CACCGGAGCT TTTGGTGCTG GTTGAGGATG TATTGCTGAA CCGCAGAGAT
GACGCAACAG AGCGCCTGGT TGAATTTGCA GACACCATCA AATCTAAAGG AAAAGAGATT
GTAAGAGATG AGGAATGGCG CAAAACAAGT GTAGAAGAAC GCTTGTCGCA TGCTTTGGTT
AAAGGAATCA TAGAATACCT GGATGCCGAT GTAGAAGAAG CGCGCCAGAA ATACGCCAGA
CCAATAGAGG TAATTGAAGG GCCGCTGATG GATGGGATGA ACATCGTAGG CGATCTGTTT
GGTGCCGGAA AAATGTTTTT ACCGCAGGTA GTAAAATCTG CCCGTGTAAT GAAAAAAGCG
GTGGCTTACC TGCTGCCCTT TATCGAACAG GAAAAACTGG ACAACCCGGA TCAGGATCAG
AATTCATCTG CCGGAAAAAT ATTGATGGCC ACTGTAAAAG GTGATGTACA CGATATCGGA
AAGAACATCG TAGGCGTAGT ACTGGCCTGC AACAACTTCG AGATCGTAGA TATGGGCGTG
ATGGTGCCCG CACAGGACAT TATCAAAAAA GCCAAAGAGA TCAATGCAGA TATCATTGGA
TTGAGTGGTC TGATTACTCC TTCGCTGGAT GAAATGGTGC ATTTTGCCAA AGAAATGGAA
CGTGAAGGTT TTACTATTCC CCTGATGATA GGTGGGGCTA CAACTTCCCG GATCCATGCT
GCTGTAAAAG TTGCGCCGAA CTATTCGGGC CCGGCCATAC ACGTACTGGA TGCTTCCAGA
AGTGTAACAG TAGCCAGTAC ATTAATGAAC AAGGATACCC GTGATGAATA TATTGCAGGT
ATCCGCGCGG AATATGACAA GGCCCGTGAA GCGCACCTGA ACAAACGCTC TGACAAGCGT
TTTAAAACAA TTGAAGAAGC CCGCAAAGAC AATTTTAAAA TCGACACCAG CCTGGTAGCC
CCTGCCCCAA CCTTTACAGG GACAAAGGTA TTTGACAATT ATCCGCTGGA AGAACTGGTG
CCTTATATAG ACTGGACACC TTTCTTTCAA ACATGGGAGC TTCGTGGTTC TTATCCAAGG
ATCCTGGAAG ACAAGGTGGT TGGTGATGAA GCAAAGAAAC TGTTTAATGA TGCTAAGGTA
TTGTTAAAAA GGATTGTAGA GGAGAAGCTA TTAACTGCCA GGGCAGTAAT CGGCTTCTGG
CCGGCAAATG CAGTTGGTGA TGACATCGTT TTAGCTGTGG AAGGAAAAGA AGTGGTGATC
CATACGCTTC GCCAGCAGGC AGAAAAAACG GCTGATCAGC CTTATTATGC CTTGTCTGAC
TTTATAGCGC AAAAGGAAAC CGGCATACCT GATTATTTTG GCGGATTTGC CCTTACAACC
GGCATAGGCT GTGATGAGCT GGTTGCTGAG TTTGAAGCGG TTTACGATGA TTACAACAGC
ATTATGGCCA AAGCTTTGGC CGACAGACTG GCAGAAGCTT TTGCAGAACG CATGCACGAG
CTGGTCCGTA AAGAGTACTG GGGATATGCA AAGGATGAAC ACCTGGACAA TGAAGCACTG
ATTAAGGAAG AATATTCCGG CATACGCCCT GCACCAGGCT ATCCCGCCTG TCCGGAGCAT
ACTGAAAAAG GCACTTTATT TGAACTGCTG GATGCAGAAG CCAGAATTGG GCTTAGCCTT
ACGGAAAGTT ACGCCATGTA CCCTACTGCA GCGGTAAGTG GATTTTACTT TGCACATCCG
CAATCCAGAT ACTTTGGTTT AGGTAAGATC ACCAAAGACC AGGTAGAAGA CTATGCAGTA
AGGAAAAACA TGCCACTGGA AGAAGTAGAA AGATGGCTGA GCCCAAATTT AGCTTATTAA
 
Protein sequence
MDIRKELEKR ILIIDGAMGT MIQRYTLTEE DFRGERFKDH PCDVKGNNDM LSITRPDVIK 
EIHTEYLKAG TDIIETNTFS TQRISLADYQ MEPLAYEMSF EGAKIAKEAV NEFMAANPDR
KCFVAGAVGP TNRTLSISPD VNDPGFRAIT FDELVEAYDE QVRGLVDGGA DLLLIETIFD
TLNAKAAIFS IKKYEAEIGR KIEIMISGTI TDASGRTLSG QTAEAFLNSV MHANPLSIGF
NCALGAKDMR PHIEELSAKA GCYVSAYPNA GLPNEFGAYD EMPHETAHLV EDFIQHGFVN
IVGGCCGTTP EHIGCIAKKA KNVAPRKIPH IEPYLRLSGL EPVTITPESI FVNIGERTNI
TGSPKFSKLI LGGDFEAALA VARQQVEGGA QVIDVNMDEG MIDSEASMTK FLNLIASEPD
ISKLPIMVDS SKWTVIEAGL KCLQGKGIVN SISLKEGEDK FRESARKIMT YGAAVVVMAF
DELGQADNFE RRKEICKRSY DILVDEIGFP AQDIIFDPNI LTVATGLEEH NNYAVDFINA
TRWIKENLPY AKVSGGVSNI SFSFRGNNTV REAMHSAFLY HAIKAGLDMG IVNAGMLEVY
QEIPPELLVL VEDVLLNRRD DATERLVEFA DTIKSKGKEI VRDEEWRKTS VEERLSHALV
KGIIEYLDAD VEEARQKYAR PIEVIEGPLM DGMNIVGDLF GAGKMFLPQV VKSARVMKKA
VAYLLPFIEQ EKLDNPDQDQ NSSAGKILMA TVKGDVHDIG KNIVGVVLAC NNFEIVDMGV
MVPAQDIIKK AKEINADIIG LSGLITPSLD EMVHFAKEME REGFTIPLMI GGATTSRIHA
AVKVAPNYSG PAIHVLDASR SVTVASTLMN KDTRDEYIAG IRAEYDKARE AHLNKRSDKR
FKTIEEARKD NFKIDTSLVA PAPTFTGTKV FDNYPLEELV PYIDWTPFFQ TWELRGSYPR
ILEDKVVGDE AKKLFNDAKV LLKRIVEEKL LTARAVIGFW PANAVGDDIV LAVEGKEVVI
HTLRQQAEKT ADQPYYALSD FIAQKETGIP DYFGGFALTT GIGCDELVAE FEAVYDDYNS
IMAKALADRL AEAFAERMHE LVRKEYWGYA KDEHLDNEAL IKEEYSGIRP APGYPACPEH
TEKGTLFELL DAEARIGLSL TESYAMYPTA AVSGFYFAHP QSRYFGLGKI TKDQVEDYAV
RKNMPLEEVE RWLSPNLAY