Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3799 |
Symbol | |
ID | 8254933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 4563188 |
End bp | 4566847 |
Gene Length | 3660 bp |
Protein Length | 1219 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644937463 |
Product | methionine synthase |
Protein accession | YP_003094052 |
Protein GI | 255533680 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATCA GAAAAGAGTT AGAAAAACGT ATCCTGATCA TTGATGGTGC AATGGGCACC ATGATACAAC GTTACACCTT AACTGAAGAG GATTTCAGAG GTGAACGCTT CAAAGATCAC CCCTGTGATG TAAAAGGGAA CAATGACATG CTGAGCATCA CACGCCCGGA TGTCATTAAA GAAATCCATA CTGAGTATTT AAAAGCCGGT ACGGACATTA TTGAAACCAA TACTTTCAGT ACCCAGCGCA TTTCCCTGGC CGACTACCAG ATGGAACCGC TTGCGTATGA GATGAGTTTT GAAGGGGCAA AAATTGCCAA AGAGGCGGTA AACGAATTTA TGGCCGCCAA CCCCGACCGC AAGTGTTTTG TGGCCGGAGC AGTGGGCCCA ACCAACAGAA CCCTCTCCAT TTCACCTGAC GTAAATGATC CGGGTTTCAG GGCCATTACC TTTGATGAAC TGGTTGAAGC TTATGACGAA CAGGTACGCG GATTGGTAGA TGGAGGTGCA GATTTGCTCC TTATTGAAAC CATTTTTGAT ACGCTGAATG CCAAGGCTGC CATATTTTCA ATTAAGAAAT ACGAAGCCGA AATTGGCCGT AAAATAGAGA TCATGATCTC TGGTACCATT ACTGATGCAT CGGGAAGAAC TTTATCTGGC CAAACGGCCG AAGCTTTCCT GAATTCTGTA ATGCATGCCA ATCCACTGAG CATTGGCTTT AACTGTGCCC TGGGTGCCAA AGACATGAGA CCCCATATTG AAGAACTTTC TGCCAAAGCA GGATGTTATG TTTCGGCTTA TCCGAATGCA GGTTTGCCCA ATGAATTTGG TGCTTATGAC GAAATGCCAC ATGAAACGGC CCACCTGGTG GAAGATTTTA TCCAGCATGG TTTTGTAAAC ATTGTAGGTG GCTGCTGTGG TACCACACCA GAGCACATTG GTTGCATTGC CAAAAAAGCG AAAAATGTAG CACCCCGCAA AATACCGCAT ATTGAACCTT ACCTGCGCTT AAGCGGGCTG GAGCCGGTAA CCATTACGCC GGAAAGCATT TTTGTAAACA TCGGGGAAAG GACCAACATT ACCGGATCAC CTAAATTCAG CAAGCTGATT TTGGGCGGCG ATTTTGAAGC AGCACTGGCT GTAGCCCGTC AGCAGGTAGA AGGTGGTGCG CAGGTGATCG ATGTGAACAT GGATGAAGGG ATGATCGATT CGGAAGCTTC GATGACAAAG TTCCTGAACC TGATCGCTTC TGAACCAGAT ATTTCCAAAC TGCCCATCAT GGTCGACTCG TCTAAATGGA CAGTAATTGA AGCTGGCTTA AAATGCCTGC AGGGCAAAGG GATTGTCAAC TCCATTTCAC TGAAAGAAGG AGAAGATAAA TTCAGGGAAA GTGCCCGTAA GATCATGACT TATGGCGCTG CTGTAGTGGT AATGGCTTTT GATGAGCTTG GCCAGGCAGA TAATTTTGAA AGAAGAAAAG AGATCTGTAA AAGATCTTAT GACATACTGG TCGATGAAAT TGGCTTTCCG GCCCAGGATA TCATTTTTGA CCCGAACATC CTTACCGTAG CTACAGGTTT GGAAGAACAC AATAATTATG CGGTCGATTT TATCAATGCC ACCCGCTGGA TTAAAGAAAA CCTGCCTTAT GCAAAAGTAA GTGGCGGGGT TTCTAATATT TCCTTTTCTT TCAGGGGTAA CAATACCGTA AGGGAAGCCA TGCATTCGGC ATTTTTATAC CATGCCATCA AGGCAGGCCT GGACATGGGG ATTGTAAATG CAGGAATGCT GGAAGTTTAT CAGGAAATTC CACCGGAGCT TTTGGTGCTG GTTGAGGATG TATTGCTGAA CCGCAGAGAT GACGCAACAG AGCGCCTGGT TGAATTTGCA GACACCATCA AATCTAAAGG AAAAGAGATT GTAAGAGATG AGGAATGGCG CAAAACAAGT GTAGAAGAAC GCTTGTCGCA TGCTTTGGTT AAAGGAATCA TAGAATACCT GGATGCCGAT GTAGAAGAAG CGCGCCAGAA ATACGCCAGA CCAATAGAGG TAATTGAAGG GCCGCTGATG GATGGGATGA ACATCGTAGG CGATCTGTTT GGTGCCGGAA AAATGTTTTT ACCGCAGGTA GTAAAATCTG CCCGTGTAAT GAAAAAAGCG GTGGCTTACC TGCTGCCCTT TATCGAACAG GAAAAACTGG ACAACCCGGA TCAGGATCAG AATTCATCTG CCGGAAAAAT ATTGATGGCC ACTGTAAAAG GTGATGTACA CGATATCGGA AAGAACATCG TAGGCGTAGT ACTGGCCTGC AACAACTTCG AGATCGTAGA TATGGGCGTG ATGGTGCCCG CACAGGACAT TATCAAAAAA GCCAAAGAGA TCAATGCAGA TATCATTGGA TTGAGTGGTC TGATTACTCC TTCGCTGGAT GAAATGGTGC ATTTTGCCAA AGAAATGGAA CGTGAAGGTT TTACTATTCC CCTGATGATA GGTGGGGCTA CAACTTCCCG GATCCATGCT GCTGTAAAAG TTGCGCCGAA CTATTCGGGC CCGGCCATAC ACGTACTGGA TGCTTCCAGA AGTGTAACAG TAGCCAGTAC ATTAATGAAC AAGGATACCC GTGATGAATA TATTGCAGGT ATCCGCGCGG AATATGACAA GGCCCGTGAA GCGCACCTGA ACAAACGCTC TGACAAGCGT TTTAAAACAA TTGAAGAAGC CCGCAAAGAC AATTTTAAAA TCGACACCAG CCTGGTAGCC CCTGCCCCAA CCTTTACAGG GACAAAGGTA TTTGACAATT ATCCGCTGGA AGAACTGGTG CCTTATATAG ACTGGACACC TTTCTTTCAA ACATGGGAGC TTCGTGGTTC TTATCCAAGG ATCCTGGAAG ACAAGGTGGT TGGTGATGAA GCAAAGAAAC TGTTTAATGA TGCTAAGGTA TTGTTAAAAA GGATTGTAGA GGAGAAGCTA TTAACTGCCA GGGCAGTAAT CGGCTTCTGG CCGGCAAATG CAGTTGGTGA TGACATCGTT TTAGCTGTGG AAGGAAAAGA AGTGGTGATC CATACGCTTC GCCAGCAGGC AGAAAAAACG GCTGATCAGC CTTATTATGC CTTGTCTGAC TTTATAGCGC AAAAGGAAAC CGGCATACCT GATTATTTTG GCGGATTTGC CCTTACAACC GGCATAGGCT GTGATGAGCT GGTTGCTGAG TTTGAAGCGG TTTACGATGA TTACAACAGC ATTATGGCCA AAGCTTTGGC CGACAGACTG GCAGAAGCTT TTGCAGAACG CATGCACGAG CTGGTCCGTA AAGAGTACTG GGGATATGCA AAGGATGAAC ACCTGGACAA TGAAGCACTG ATTAAGGAAG AATATTCCGG CATACGCCCT GCACCAGGCT ATCCCGCCTG TCCGGAGCAT ACTGAAAAAG GCACTTTATT TGAACTGCTG GATGCAGAAG CCAGAATTGG GCTTAGCCTT ACGGAAAGTT ACGCCATGTA CCCTACTGCA GCGGTAAGTG GATTTTACTT TGCACATCCG CAATCCAGAT ACTTTGGTTT AGGTAAGATC ACCAAAGACC AGGTAGAAGA CTATGCAGTA AGGAAAAACA TGCCACTGGA AGAAGTAGAA AGATGGCTGA GCCCAAATTT AGCTTATTAA
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Protein sequence | MDIRKELEKR ILIIDGAMGT MIQRYTLTEE DFRGERFKDH PCDVKGNNDM LSITRPDVIK EIHTEYLKAG TDIIETNTFS TQRISLADYQ MEPLAYEMSF EGAKIAKEAV NEFMAANPDR KCFVAGAVGP TNRTLSISPD VNDPGFRAIT FDELVEAYDE QVRGLVDGGA DLLLIETIFD TLNAKAAIFS IKKYEAEIGR KIEIMISGTI TDASGRTLSG QTAEAFLNSV MHANPLSIGF NCALGAKDMR PHIEELSAKA GCYVSAYPNA GLPNEFGAYD EMPHETAHLV EDFIQHGFVN IVGGCCGTTP EHIGCIAKKA KNVAPRKIPH IEPYLRLSGL EPVTITPESI FVNIGERTNI TGSPKFSKLI LGGDFEAALA VARQQVEGGA QVIDVNMDEG MIDSEASMTK FLNLIASEPD ISKLPIMVDS SKWTVIEAGL KCLQGKGIVN SISLKEGEDK FRESARKIMT YGAAVVVMAF DELGQADNFE RRKEICKRSY DILVDEIGFP AQDIIFDPNI LTVATGLEEH NNYAVDFINA TRWIKENLPY AKVSGGVSNI SFSFRGNNTV REAMHSAFLY HAIKAGLDMG IVNAGMLEVY QEIPPELLVL VEDVLLNRRD DATERLVEFA DTIKSKGKEI VRDEEWRKTS VEERLSHALV KGIIEYLDAD VEEARQKYAR PIEVIEGPLM DGMNIVGDLF GAGKMFLPQV VKSARVMKKA VAYLLPFIEQ EKLDNPDQDQ NSSAGKILMA TVKGDVHDIG KNIVGVVLAC NNFEIVDMGV MVPAQDIIKK AKEINADIIG LSGLITPSLD EMVHFAKEME REGFTIPLMI GGATTSRIHA AVKVAPNYSG PAIHVLDASR SVTVASTLMN KDTRDEYIAG IRAEYDKARE AHLNKRSDKR FKTIEEARKD NFKIDTSLVA PAPTFTGTKV FDNYPLEELV PYIDWTPFFQ TWELRGSYPR ILEDKVVGDE AKKLFNDAKV LLKRIVEEKL LTARAVIGFW PANAVGDDIV LAVEGKEVVI HTLRQQAEKT ADQPYYALSD FIAQKETGIP DYFGGFALTT GIGCDELVAE FEAVYDDYNS IMAKALADRL AEAFAERMHE LVRKEYWGYA KDEHLDNEAL IKEEYSGIRP APGYPACPEH TEKGTLFELL DAEARIGLSL TESYAMYPTA AVSGFYFAHP QSRYFGLGKI TKDQVEDYAV RKNMPLEEVE RWLSPNLAY
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