Gene Phep_3786 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3786 
Symbol 
ID8254920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4540599 
End bp4541408 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content44% 
IMG OID644937450 
ProductEndonuclease/exonuclease/phosphatase 
Protein accessionYP_003094039 
Protein GI255533667 
COG category[R] General function prediction only 
COG ID[COG3568] Metal-dependent hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGAA TTACATTTTT CCTTATTGCG CTCTTTCTGC AACTGAACCT CCGGCCCGAG 
GGGTATGCGC AAACAAAACC TGCTGATAAA AACGCAGGAA AGACATTGCG CATCATGAGT
TATAACATCC ACCATGCAAA CCCGCCATCC AAACCAGACC TGATTGATCT GGATGCCATT
GCCCGGGTGA TCACAGCTAG TAAGGCAGAC ATTGTAGCAC TACAGGAAGT AGAAACCGGT
GTAAGCCGGA GCGGAGGGGC AAACGAAGCG AAGATACTTG CAGAAAAAAC AGGATTTCAG
TACCATTTTT TTAAAGCCAT CGATTACGAT GGCGGTGATT ATGGGATTGC CATACTGAGC
CGTTACCCAT TAAAGGAGAT CAGACTGGTA CCACTGCCAC AGCAAATCAC TGCCGAAAAA
CGTATATTGG GTTATGCCAC CATAAAGGTA GGTAAACAGA AAATCATATT TGCAAATACC
CACCTCGATG CAAGCAGGAC AGATGAAAAC AGGCTCGTCC AGATGCAAAG CATCCTTAAA
GAATTTGAGC ATGCTGCGCT GCCGGTAATT TTATGTGGCG ACTTAAACAG CGTTGCTGGT
TCATCAGTGA TCAGTTTACT TGATGCGCAG TTTAAACGTA CCTGTACAGA AAATTGTCCT
CCTACCTCGC CCCAGATTAA CCCCCGTCGT ACTATAGATT ATATCGCCAC CAAAAATGTA
ACCTGGCCTT TGCTGGAATA TCAGGTAATA GCAGAAACTT ATGCTTCAGA TCACAGACCT
GTAATGGCAA TTTTTAACCT GGAAAAATAA
 
Protein sequence
MNRITFFLIA LFLQLNLRPE GYAQTKPADK NAGKTLRIMS YNIHHANPPS KPDLIDLDAI 
ARVITASKAD IVALQEVETG VSRSGGANEA KILAEKTGFQ YHFFKAIDYD GGDYGIAILS
RYPLKEIRLV PLPQQITAEK RILGYATIKV GKQKIIFANT HLDASRTDEN RLVQMQSILK
EFEHAALPVI LCGDLNSVAG SSVISLLDAQ FKRTCTENCP PTSPQINPRR TIDYIATKNV
TWPLLEYQVI AETYASDHRP VMAIFNLEK