Gene Phep_3751 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3751 
Symbol 
ID8254883 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4492167 
End bp4493492 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content43% 
IMG OID644937413 
Productsigma-54 factor interaction domain-containing protein 
Protein accessionYP_003094004 
Protein GI255533632 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAAA TACTGATCAT TGAAGACGAC TCTACTTTTT CTCAGGTATT GGAAGGTTTT 
TTTACAAAAC AGGGCCACGA ACCCCAGGTG GTAAACAATG TAAAAAAAGC TTTTAAAATA
ACAGACGAAC AAAGCTTTGA CCTGTTGTTG ATTGATTACC GTTTACCTGA TGGAACGGGA
TTGGATATTC TTTCGCACGT TCTGGAAAAA GGGTTGTTAC AACCGGTTAT TATCATGACC
AGCTTTAACG ATGTCAGAAC AGCCGTAAAA TCTATACAGC TTGGTGCTTT TGATTACATC
ACAAAACCCG TTAATCCGGA TGAGTTGATG ATGATCATTA AAAATGCCCT GGGCAAGAAG
GAAAACAGCC GCAATAGCGC TGTTGAACAT GCAGATGCTA TAAAAGGTAA AAGTGCTATT
GCCGATAAAC TTTATGAGCA CATTAACCTG GTGGCCCCTA CCGACATGTC TGTAATTATA
CAGGGTGAAA GCGGCACGGG TAAGGAGTAT GCTGCGCGTG CCCTACATGC GCAAAGTAAG
CGCAGGGATA AACCTTTTGT GGCTATAGAC TGTGGTGCCC TGTCAAAAGA CCTGGCTGCC
AGTGAATTAT TTGGCCATAC CAAAGGTGCT TTTACAGGTG CTTTAAATGA TAAAAAAGGG
CAGTTTGAAG CTGCAAACAG TGGTACGCTG TTTCTGGATG AGGTTGGGAA CTTAAGTTAT
GAAGTACAGG TTAAAATGTT GCGCGCCCTG CAGGAAAGAA TTATACAGCC GCTGGGCAGT
ACCAAGACCA TTAAAGTAGA CGTGCGGATC ATTACGGCCA CAAACGATGA TCTTAAAACC
AGTGTTGCCA ATGGTCTGTT CAGAGAAGAC CTTTACCACC GGCTTAATGA ATTTAAGATA
CAGTTACCGG CTCTGAGGGA CAGGGGTAAA GACATTGAGC TTTTTATCAG CCACTTCATC
AAACTTTCCA ATTCGGAATT GGACAGGAAC GTACAAAGCA TATCTCCTCA GGCCAAAGAG
CTGTTGCTCC GGTACGACTG GCCGGGAAAC CTTCGTGAGC TCAAAAATGT GATCAAGCGA
ATGGTGCTGC TTACACCTGG AGAAACTGCA GAAGTTGATG CTCTTCCAGA AGAAATGATC
ATTTCTATAA ACCATTCTCC CCGGCCAAGT ACTTCGGACC TTAAAGTGAT TAACGAGTTA
AACGAAAAAG CATTGATTAC GGAAACCCTG GTTAAAGTAA AGTACAACAA ATCTAAAGCG
GCAAAACTCC TCAATATTGA CCGTAAAACC TTGTACAGTA AAATGGAACG TTATGGCATT
GAATAA
 
Protein sequence
MAKILIIEDD STFSQVLEGF FTKQGHEPQV VNNVKKAFKI TDEQSFDLLL IDYRLPDGTG 
LDILSHVLEK GLLQPVIIMT SFNDVRTAVK SIQLGAFDYI TKPVNPDELM MIIKNALGKK
ENSRNSAVEH ADAIKGKSAI ADKLYEHINL VAPTDMSVII QGESGTGKEY AARALHAQSK
RRDKPFVAID CGALSKDLAA SELFGHTKGA FTGALNDKKG QFEAANSGTL FLDEVGNLSY
EVQVKMLRAL QERIIQPLGS TKTIKVDVRI ITATNDDLKT SVANGLFRED LYHRLNEFKI
QLPALRDRGK DIELFISHFI KLSNSELDRN VQSISPQAKE LLLRYDWPGN LRELKNVIKR
MVLLTPGETA EVDALPEEMI ISINHSPRPS TSDLKVINEL NEKALITETL VKVKYNKSKA
AKLLNIDRKT LYSKMERYGI E