Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3751 |
Symbol | |
ID | 8254883 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 4492167 |
End bp | 4493492 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644937413 |
Product | sigma-54 factor interaction domain-containing protein |
Protein accession | YP_003094004 |
Protein GI | 255533632 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAAA TACTGATCAT TGAAGACGAC TCTACTTTTT CTCAGGTATT GGAAGGTTTT TTTACAAAAC AGGGCCACGA ACCCCAGGTG GTAAACAATG TAAAAAAAGC TTTTAAAATA ACAGACGAAC AAAGCTTTGA CCTGTTGTTG ATTGATTACC GTTTACCTGA TGGAACGGGA TTGGATATTC TTTCGCACGT TCTGGAAAAA GGGTTGTTAC AACCGGTTAT TATCATGACC AGCTTTAACG ATGTCAGAAC AGCCGTAAAA TCTATACAGC TTGGTGCTTT TGATTACATC ACAAAACCCG TTAATCCGGA TGAGTTGATG ATGATCATTA AAAATGCCCT GGGCAAGAAG GAAAACAGCC GCAATAGCGC TGTTGAACAT GCAGATGCTA TAAAAGGTAA AAGTGCTATT GCCGATAAAC TTTATGAGCA CATTAACCTG GTGGCCCCTA CCGACATGTC TGTAATTATA CAGGGTGAAA GCGGCACGGG TAAGGAGTAT GCTGCGCGTG CCCTACATGC GCAAAGTAAG CGCAGGGATA AACCTTTTGT GGCTATAGAC TGTGGTGCCC TGTCAAAAGA CCTGGCTGCC AGTGAATTAT TTGGCCATAC CAAAGGTGCT TTTACAGGTG CTTTAAATGA TAAAAAAGGG CAGTTTGAAG CTGCAAACAG TGGTACGCTG TTTCTGGATG AGGTTGGGAA CTTAAGTTAT GAAGTACAGG TTAAAATGTT GCGCGCCCTG CAGGAAAGAA TTATACAGCC GCTGGGCAGT ACCAAGACCA TTAAAGTAGA CGTGCGGATC ATTACGGCCA CAAACGATGA TCTTAAAACC AGTGTTGCCA ATGGTCTGTT CAGAGAAGAC CTTTACCACC GGCTTAATGA ATTTAAGATA CAGTTACCGG CTCTGAGGGA CAGGGGTAAA GACATTGAGC TTTTTATCAG CCACTTCATC AAACTTTCCA ATTCGGAATT GGACAGGAAC GTACAAAGCA TATCTCCTCA GGCCAAAGAG CTGTTGCTCC GGTACGACTG GCCGGGAAAC CTTCGTGAGC TCAAAAATGT GATCAAGCGA ATGGTGCTGC TTACACCTGG AGAAACTGCA GAAGTTGATG CTCTTCCAGA AGAAATGATC ATTTCTATAA ACCATTCTCC CCGGCCAAGT ACTTCGGACC TTAAAGTGAT TAACGAGTTA AACGAAAAAG CATTGATTAC GGAAACCCTG GTTAAAGTAA AGTACAACAA ATCTAAAGCG GCAAAACTCC TCAATATTGA CCGTAAAACC TTGTACAGTA AAATGGAACG TTATGGCATT GAATAA
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Protein sequence | MAKILIIEDD STFSQVLEGF FTKQGHEPQV VNNVKKAFKI TDEQSFDLLL IDYRLPDGTG LDILSHVLEK GLLQPVIIMT SFNDVRTAVK SIQLGAFDYI TKPVNPDELM MIIKNALGKK ENSRNSAVEH ADAIKGKSAI ADKLYEHINL VAPTDMSVII QGESGTGKEY AARALHAQSK RRDKPFVAID CGALSKDLAA SELFGHTKGA FTGALNDKKG QFEAANSGTL FLDEVGNLSY EVQVKMLRAL QERIIQPLGS TKTIKVDVRI ITATNDDLKT SVANGLFRED LYHRLNEFKI QLPALRDRGK DIELFISHFI KLSNSELDRN VQSISPQAKE LLLRYDWPGN LRELKNVIKR MVLLTPGETA EVDALPEEMI ISINHSPRPS TSDLKVINEL NEKALITETL VKVKYNKSKA AKLLNIDRKT LYSKMERYGI E
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