| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3683 |
|---|
| Symbol | |
|---|
| ID | 8254814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 4395806 |
|---|
| End bp | 4397509 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644937344 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_003093936 |
|---|
| Protein GI | 255533564 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA GATGGGTGCA GGCTTTACAG GGCAATAAAG AGACAACAGC GCTGCTTGCA
CAACAATTAA ACATAGACAG CAGTTTGGCC CAGATACTGG TACAAAGGGG TATTTCCTCT
TTCGAAGAGG CAAGGCAATA TTTCAGACCG GACATGGGCA GGTTACACGA TCCTTTTTTA
ATGAAGGACA TGGACAAAGC TATTGAACGT ATTGATAAGG CCATTAACAG TCGCGAAAAG
ATATTGGTTT ATGGCGATTA TGATGTAGAC GGGACCACAT CTGTAGCCCT TGCCTTTAGT
TTCTTTAGCC AGTTTACAGA TCAGATAGGC TATTATATTC CGGACAGACA TAAAGAAGGT
TATGGCATTT CTACAGCAGG GATTGATTAT GCAAATGCAA ATGGCATCAG CTTAATTATT
GCGCTTGACT GTGGGATAAA ATCAACAGAT AAAATAGCTT ATGCCAATAG TCTGAATATC
GATTTTATCA TCTGTGACCA TCATTTACCT GGTGAGGTAT TACCGGCTGC AGTGGCCATA
CTTGATCCAA AACGGAAGGA TTGCCCCTAC CCTTTTAAAG AGCTGGCTGG TTGTGGTATT
GGATTTAAAC TGGCACAGGC TTACTGCCTG CAGCATCGCC TACCTCAGGA GCAGTATGAG
CGTTACCTGG ACCTGGTGAT GGTAAGTATT GCGGCCGACA TTGTCCCGAT AGAAGATGAA
AACCGGATAC TGGCTTATCA CGGCCTGATT AAGCTGAACA GCAATCCCTG TATAGGGCTC
AAGGCATTGA TGGACATATC AGGAAAAAAC AAAGATTACA CCCTTACCGA CGTGGTATTT
ACACTTGCCC CACGTATTAA TGCTGCCGGA AGGATGGATC ATGCCAACCA GGCAGTAAAA
ATGTTGCTCT GTACGGAGGA TAATCTGGCA CAGGAACAGA GTTTACTGAT CAACCTTCAA
AATACAGAAC GCAAAACTTC GGACCAGAAC ATGACTGCCG AAGCCCTGGC ATTGATAGCT
GAATGTGAAA TCCTCATCAA TAAAAAAACA ACCGTTGTTT ACCATGAAAA CTGGAATAAA
GGGGTAATTG GTATTGTAGC CTCGAGGCTG ACAGAAAAAT ATTATCGTCC TACAGTCGTA
CTTACCAAAT CGAATGGTCT GTTAACCGGA TCTGCACGTT CTGTAGCAGG GTTTGACCTC
TATGAGGCAC TACTGGGCTG CGAAGATCTA CTGGTACAAT TTGGCGGACA TAAATTTGCA
GCCGGATTAA CCATAAAAGC TGAAGATATC GGTTTTTTCA CAGAACGTTT CGAAAACATA
GTTGCTGCAA CCATTACGGA AGACCTGCTT TGTCCCGAAA TCAGTATAGA CAACGAGATC
CGGTTAAGGC AGATAGATGG AAAATTTCAG CGCATTATTG CTCAAATGGC CCCTTTTGGC
CCACACAATA TGGCCCCTGT ATTTGTGAGC CATGAAGTAT TTCTAGCCAG CAAACCTTAT
GTTGTAGGCA CAAAACATTT AAAATTAGCT ATAAAACAAC AAAATTCATC TATTTTTGAA
TGCATAGCTT TTGGAATGGC TGAAGAATAT GAACAACTGT TACAACCAAA CCAGCCTTTT
TCTGTTTGTT ATACAATTGA AGAAAATATA TGGAAAGCGC AAAAGCGTTT ACAGTTAAAT
ATTAAAGAGA TTAAACTGAA TTGA
|
|---|
| Protein sequence | MKKRWVQALQ GNKETTALLA QQLNIDSSLA QILVQRGISS FEEARQYFRP DMGRLHDPFL
MKDMDKAIER IDKAINSREK ILVYGDYDVD GTTSVALAFS FFSQFTDQIG YYIPDRHKEG
YGISTAGIDY ANANGISLII ALDCGIKSTD KIAYANSLNI DFIICDHHLP GEVLPAAVAI
LDPKRKDCPY PFKELAGCGI GFKLAQAYCL QHRLPQEQYE RYLDLVMVSI AADIVPIEDE
NRILAYHGLI KLNSNPCIGL KALMDISGKN KDYTLTDVVF TLAPRINAAG RMDHANQAVK
MLLCTEDNLA QEQSLLINLQ NTERKTSDQN MTAEALALIA ECEILINKKT TVVYHENWNK
GVIGIVASRL TEKYYRPTVV LTKSNGLLTG SARSVAGFDL YEALLGCEDL LVQFGGHKFA
AGLTIKAEDI GFFTERFENI VAATITEDLL CPEISIDNEI RLRQIDGKFQ RIIAQMAPFG
PHNMAPVFVS HEVFLASKPY VVGTKHLKLA IKQQNSSIFE CIAFGMAEEY EQLLQPNQPF
SVCYTIEENI WKAQKRLQLN IKEIKLN
|
|---|
| |