| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3676 |
|---|
| Symbol | |
|---|
| ID | 8254807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4387908 |
|---|
| End bp | 4389482 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644937337 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_003093929 |
|---|
| Protein GI | 255533557 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATAC GATCTCTATT TGTTTTTATA GCCCTTCTGA GTATTTGTAG CCTGACCTAT
GCCCGGCAGG ATATCAATGC TTTTAAAGGT TATCCTGTCA TTGCACATGC AGATACCTTA
TTCCATATAA AAAATAAGCT TGGCTCTTTA TCCGCCCAGG AGAGGGCCGA GAGAACCTCT
GCAAAAGTGG AAGCCCTGGC AGAAGACCTG CTTTTTGTAG CTGATTCTTT AGTCACAGAA
GATGATTCAA CCCTTGTGTC GATTAGCTAT AAAGGTAATG TGCTCCTGAG TTTATCGAAA
GCTGATGCAG ATTCCGTAAA AATGGATAGA CAGGTAATGG TTAAGGCTTA CCAGGAAATT
ATACTCAATA ATATCCATAA GTATAAGAAG GATACAGATC TGACAGAATT GTTAAAGCGT
GGGGCATTAG GTATCCTGAT CATCTCTATT CTGGGCATAT GTATATTTTT CCTGAATAAA
TATTCAAACC GTTTCAATGC CTGGCTCCGG GTAAAGCTGC ATCAAAGGAT TGCAGGCCTT
AAAATTAAAA ATTATGAATT GATTAGCGGT AAGGACGAGC TGCTGCTGAT CCGAAAGGTA
CTTAACCTGG TTAAGATACT TGTGATATTT ATTCTTGTTT ACCTTACGCT GCCTATCGTA
TTTCGCCTTT TTCCTTGGAC AAAACCCTGG AGTGATAGTC TGATTGGTTT TGTGCTTAAC
CCCCTGAAAA ATATATTCAG CGGAATTATT GCCTTTATCC CCGACCTGAT CACAATAGCC
GTTATTGTGT TTGTATTTCA CTACATTAAA AAAGCAATTA AATTTCTGGC AAATGAGATT
GAAGCGGAGA AACTTAAGAT CAATGGTTTT TATGCCGATT GGGCAAAGCC AACCTTTAAC
ATTGTCAGGC TTGTATTAAA TGCGTTTATG CTGGTGGTGA TATGGCCATT TATCCCGGGC
TCAGATTCGG GTATATTTAA AGGTGTTTCT GTATTTTTAG GATTGCTCAT CTCTTTTGGT
TCTTCGTCTG CCATCAGCAA TGGTGTGGCC GGTATGGTCA TTACCTATAT GCGGCCTTTT
AAATTAGGTG ATATTGTGAA GATTGGTGAT ACAACGGGTA CTGTACTGGA AAAATCACTG
TTGGTCACGC GTATCTTAAC TTTTAAAAAT GAGGTCATTA CCATTCCCAA TAGTGCTATA
TTAAATGGGA ACACAGTAAA TTACAGCAGT ATGGCCAGTC AGAATGATTT GATTATCCAC
ACATCTGTTA CCCTTGGCTA CGATCTTCCC TGGGCACAAA TTCATGAACT CTTAATTGCT
GCGGCTTTGG CTTCTGAAGG GGTAATCAAG GAAAAAGCGC CGTTTGTATT ACAAACCAGC
CTTGAAGACT GGTATGTATC CTATGAACTG AATGTTTATA TCAATAATCC ACAGAAAATG
CCCCGTATCT ATTCGGAGCT CCATAAGCAA ATTCATATCG CTTTTGATGC TGCAGGTGTA
GAAATCATGT CGCCGCATTA CCAGGCCATT AGGGATGGGA ACGCAAGTAC TGTTTCCCCC
ATTAAGGTGT CTTAA
|
|---|
| Protein sequence | MSIRSLFVFI ALLSICSLTY ARQDINAFKG YPVIAHADTL FHIKNKLGSL SAQERAERTS
AKVEALAEDL LFVADSLVTE DDSTLVSISY KGNVLLSLSK ADADSVKMDR QVMVKAYQEI
ILNNIHKYKK DTDLTELLKR GALGILIISI LGICIFFLNK YSNRFNAWLR VKLHQRIAGL
KIKNYELISG KDELLLIRKV LNLVKILVIF ILVYLTLPIV FRLFPWTKPW SDSLIGFVLN
PLKNIFSGII AFIPDLITIA VIVFVFHYIK KAIKFLANEI EAEKLKINGF YADWAKPTFN
IVRLVLNAFM LVVIWPFIPG SDSGIFKGVS VFLGLLISFG SSSAISNGVA GMVITYMRPF
KLGDIVKIGD TTGTVLEKSL LVTRILTFKN EVITIPNSAI LNGNTVNYSS MASQNDLIIH
TSVTLGYDLP WAQIHELLIA AALASEGVIK EKAPFVLQTS LEDWYVSYEL NVYINNPQKM
PRIYSELHKQ IHIAFDAAGV EIMSPHYQAI RDGNASTVSP IKVS
|
|---|
| |