| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3655 |
|---|
| Symbol | |
|---|
| ID | 8254786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 4369075 |
|---|
| End bp | 4370481 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644937316 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
|---|
| Protein accession | YP_003093908 |
|---|
| Protein GI | 255533536 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.392755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAA CACCACTAAG CCTGTTATTG CTGCTGATCA GCAGTATTAC CTGGGCCCAG
ACACCGGTTC AAAAGCTGGA AAGGGCCTTT AATGATTTTC TGGCCAATCC TCAGACCAGG
TATGCCTCAA CTTCCCTGCT GGTGCTGGAT GCCAATACAG GAAAAACCTT ATTTGGCAGA
AATGAAAATA TTGGCCTGGC CACGGCCTCT ACCTTAAAAA CCATTACTGC AGCAACCGCA
TTCAATATCC TTGGAAAAGA TTTTCAGTTT CAGACCACAC TGGGTTACAC AGGGCAGCTG
ACTCCCGACG GTACGTTAAA GGGGAACCTG GTGATTACAG GAAGTGGAGA TCCGACCCTG
GGTTCGGCCC GTTATCAGAA CAAAGAAAAG GCGGTGCTAG ACCAATGGGT GAATGCCATT
AGTGCAGCAG GTATAAAGCG GATTGAAGGA ATGGTGATTG GTGATGACCG TATTTTTGGA
ACACAGACCA CTCCTGAAGG CTGGACCTGG CAGGACATTG GCAATTATTA TGGTGCCGGA
ACTTCCGGAC TGGCCTGGCG TGAAAATCAG TTTGACATTC ATCTGCAGCC CGGACAGGGT
ATAAATACAG CGGTAAAGCT TTTACGTACT GTTCCGGAAA TGCCTTATTT AAAGCTGGTG
AACGAGCTCA AAACGGGGGC TTCAGGTACT GGCGACAATG CTTATGCTTT TCTGCCGCCT
TACAGCAATA TTGGTTATCT GAGAGGTAGC TGGGGCATGG GGATCGGTAA AAATGGGATC
TCTGCGGCGC TTCCCGACCC GGCCTTCGAC TGCGCCTACC GTTTACAGGA TACCCTGAAA
AGATTGGGGA TCAGTACAGC AAAACCTGCA ACAAGTACAC GTATGATGGC GCTAAACGGT
GAAGAACTAC CGGGAATTAC AAAGAACTTA AGCAGCATCA GCTCTCCACC CTTAAGTGAA
ATTGTATTCT GGTTCCTGAA GAAAAGCATC AACCTGTATG GAGAAACACT ATTGAAAACA
CTGGCATTAA AATCAGGAAA AATGGCTAAA ACTACTGAAG GGGCTAAGGC TGAAATTAAC
TTCTGGGCAG ATAAGGGCAT CGACAGAAAT GCGCTGAACA TCATCGATGG CAGTGGCCTG
TCTCCTGCAA ACCGTGTAAC CGCCGCAGCT ATGGGCAGCA TTTTATTTAT GGCCCAGACG
GCCTCCTGGT TTAGCGATTA CTACAAGGCC TTTCCGGAAT ATAACGGAAT GAAAATTAAA
AGCGGCACCA TTAACGATGT ATCAGCCTTT GCAGGCTATT ATACAAATGG GGCCGGCAAT
AAATACATCA TTGTCATCAA TATCAACAAT TATTCAGGGT CGGGCATCAA CCGTAAACTC
TTTAAAGTAT TGGATGCTTT AAAGTAA
|
|---|
| Protein sequence | MFKTPLSLLL LLISSITWAQ TPVQKLERAF NDFLANPQTR YASTSLLVLD ANTGKTLFGR
NENIGLATAS TLKTITAATA FNILGKDFQF QTTLGYTGQL TPDGTLKGNL VITGSGDPTL
GSARYQNKEK AVLDQWVNAI SAAGIKRIEG MVIGDDRIFG TQTTPEGWTW QDIGNYYGAG
TSGLAWRENQ FDIHLQPGQG INTAVKLLRT VPEMPYLKLV NELKTGASGT GDNAYAFLPP
YSNIGYLRGS WGMGIGKNGI SAALPDPAFD CAYRLQDTLK RLGISTAKPA TSTRMMALNG
EELPGITKNL SSISSPPLSE IVFWFLKKSI NLYGETLLKT LALKSGKMAK TTEGAKAEIN
FWADKGIDRN ALNIIDGSGL SPANRVTAAA MGSILFMAQT ASWFSDYYKA FPEYNGMKIK
SGTINDVSAF AGYYTNGAGN KYIIVININN YSGSGINRKL FKVLDALK
|
|---|
| |