| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3607 |
|---|
| Symbol | |
|---|
| ID | 8254738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4314650 |
|---|
| End bp | 4316197 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644937268 |
|---|
| Product | methylmalonyl-CoA mutase, large subunit |
|---|
| Protein accession | YP_003093860 |
|---|
| Protein GI | 255533488 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
|---|
| TIGRFAM ID | [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATA AAAAATTCAC CACCACATCG GGTATAGAAA TAAAAGAAGT GTATAATACA
GCCAGCGCAC CTTTAGAAGG GCCTGGCGAA TTTCCGTATA CCCGGGGAAT CCAAAAGGAC
ATGTACAGGG GGCGGTTGTG GACCATGCGC CAGTACGCCG GATTTTCTAC AGCTGAAGAA
TCCAATAAGC GCTATCACTA TCTGTTGAAA CAGGGTACAA TGGGACTTTC GGTAGCATTT
GACCTGCCCA CCCAGATCGG TTACGATTCC GATCATGAAA TGTCGGAAGG GGAAGTGGGT
AAGGTTGGTG TAGCCATCGA TTCCTTAAAG GATATGGAGA TCTTGTTTGA TGGGATTGAA
CTGCAAAAGA TCACTACCTC TATGACCATT AATGCCACGG CCTCTATTTT GCTGGCCATG
TACATTGCTT TGGCTAAAAA ACAGGGCGCA GACATTAAAC AGATCTCTGG GACAATACAG
AACGATATCT TAAAAGAATA TGCAGCAAGG GGCACCTACA TCTATCCGCC CAAGCCTTCT
ATGCGTATCA TCACCGATAT TTTTGAATAT TGCAGCAGGG AGGTCCCAAA ATGGAATACC
ATTTCAATTT CAGGTTATCA CATCAGGGAA GCCGGCTCTA CAGCAGTACA GGAGCTGGCG
TTTACCTTGG CCAATGGAAA AGCTTATTTA AATGCGGCCC TTGAAAAAGG ACTCGACATC
AACATTTTTG CAAAACGTCT CTCCTTCTTT TTTAACTGCC ACAACAATTT CTTTGAAGAA
ATTGCAAAAT TCAGGGCTGC GAGAAGAATG TGGGCGAAGA TCACAAAGCA ATTGGGTGCC
ACTGATGAAA AGGCACAAAT GCTTAGGTTC CATACACAGA CAGGAGGCTC TACCTTAACT
GCGCAACAGC CACTGAACAA TGTAATCAGG GTAACCAACC AGGCGATGGC CGCAGTATTA
GGAGGAACAC AGTCCCTGCA CACCAATGGT TATGATGAGG CCCTTTCCTT ACCTACCGAA
GCTGCGGCAA AAATTGCCCT GCGTACCCAG CAGGTGATCG CTTTTGAAAG CGGGGTAACG
GATACGGTTG ATCCTTTGGC AGGTTCCTAT TTTGTAGAGG CGCTGACCAA TGATATTGAA
GCTGCTGCCC AGTTGTATAT TGATAAAATT GACGCTATGG GCGGTTCAGT AAATGCCATT
GAAAATGGCT ATATCCAGAA CGAGATTGCT GATGCGGCTT ACCAGTACCA GGTGGAGGTA
GAACAGGCCA GCAGAGTAAT TGTTGGTGTG AACAAATTTA CCCAGGATAA GGAGGCGATC
GATGATGTAT TTACCATTGA TGAATCCATC AGGACGATAC AAACAGAAAA ACTGCAAAAG
CTGAGAACAG AAAGGGACAA TGTTGCAGTT GAGCAGGCAT TAAACAACCT GATGCAGGCT
GCCAGAGGAA CTGACAATCT GATGCCGTTT ATTCTTGCAG CGGTGGAAGA ATATGCCAGT
CTTGGCGAAA TTGCCAATGT GCTGCGAAAT GTTTTTGGAG AATATTGA
|
|---|
| Protein sequence | MSNKKFTTTS GIEIKEVYNT ASAPLEGPGE FPYTRGIQKD MYRGRLWTMR QYAGFSTAEE
SNKRYHYLLK QGTMGLSVAF DLPTQIGYDS DHEMSEGEVG KVGVAIDSLK DMEILFDGIE
LQKITTSMTI NATASILLAM YIALAKKQGA DIKQISGTIQ NDILKEYAAR GTYIYPPKPS
MRIITDIFEY CSREVPKWNT ISISGYHIRE AGSTAVQELA FTLANGKAYL NAALEKGLDI
NIFAKRLSFF FNCHNNFFEE IAKFRAARRM WAKITKQLGA TDEKAQMLRF HTQTGGSTLT
AQQPLNNVIR VTNQAMAAVL GGTQSLHTNG YDEALSLPTE AAAKIALRTQ QVIAFESGVT
DTVDPLAGSY FVEALTNDIE AAAQLYIDKI DAMGGSVNAI ENGYIQNEIA DAAYQYQVEV
EQASRVIVGV NKFTQDKEAI DDVFTIDESI RTIQTEKLQK LRTERDNVAV EQALNNLMQA
ARGTDNLMPF ILAAVEEYAS LGEIANVLRN VFGEY
|
|---|
| |