Gene Phep_3561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3561 
Symbol 
ID8254682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand- 
Start bp4238506 
End bp4239717 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content43% 
IMG OID644937212 
Product3,4-dihydroxy-2-butanone 4-phosphate synthase 
Protein accessionYP_003093814 
Protein GI255533442 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase 
TIGRFAM ID[TIGR00505] GTP cyclohydrolase II
[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.463125 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATTA AACTTGATGC AATAGAAGAT GCTATTGCGG ATATAAAAGC AGGGAAGGTT 
ATTATTGTTG TCGACGATGA AGACCGCGAA AACGAAGGAG ACTTTTTAAC CGCCGCAGAG 
AATGCGACGC CAGAGGTAAT TAACTTTATG GCTACCTATG GCCGTGGATT AATATGTGCA 
CCGCTAACTG AGCAAAGATG CGATGAACTG GGTTTAGAAT CTATGGTTGG GAAAAATACT 
GCTGCCTATG AAACAAATTT TACGGTATCC GTCGATTTGC TTGGTCATGG TTGTACAACC 
GGAATTTCAG CATCTGACAG ATCAAAAACT ATACTTGCAC TGATCGATCC TAAAATAGAT 
CCTTCAGAAC TGGGCAGACC AGGACATATT TTTCCGTTAA GGGCAAAAGA TGGGGGCGTT 
TTAAGACGCG CTGGCCATAC AGAAGCTTCT ACTGACCTGG CCAGACTGGC AGGAATGAAA 
GAGGCAGGAG TGCTGGTAGA AATATTAAAA GAAGATGGGG AAATGGCCAG GCTTCCGGAT 
CTGATTAAGA TTGCAGAAAG ACATCAGCTT AAAATCATAT CCATAAAGGA CCTTATTGCC 
TACAGACTGA GCAAAGAGAG CTTGATTAAG GAAGAAGTTA CGATTAATTT GCCAACTCAG 
TGGGGCGATT TCAAGATGAC AGCTTATACA CAGATAGACA ACTATGCAAC TCACCTGGCT 
ATCAGTAAGG GAACATGGGC TGCCGATGAG CCTGTACTGG CCAGAGTGCA CAGTTCCTGC 
GTTACAGGAG ATATTTTTGG ATCATGCCGC TGCGATTGCG GTCCGCAACT GCACAAAGCT 
TTGGAAATGA TCGATAAAGA AGGCAAAGGG GTAGTGGTTT ACATGAACCA GGAGGGCCGG 
GGAATTGGCC TGATCAATAA ATTGCGTTCT TATAATCTTC AGGATGCGGG TTTTGATACC 
GTTGAAGCCA ATATTAAACT AGGATTTAAA GGAGATGAAC GGGATTATGG TGTTGGGGCT 
CAGATATTAA GGGCGCAGGG GGTAACTAAA ATGCGCTTAA TGTCTAATAA CCCTACAAAA 
CGGGCAGGTT TAATTGGTTA TGGTCTGGAA ATTGTGGAGA ACATTCCTAT TGAAATAGAG 
AGCAATATCC ACAATGAGCT TTACTTAAAA ACAAAGCGGG ATAAGATGGG CCATCAGATT 
ATGAAAGGCT AA
 
Protein sequence
MEIKLDAIED AIADIKAGKV IIVVDDEDRE NEGDFLTAAE NATPEVINFM ATYGRGLICA 
PLTEQRCDEL GLESMVGKNT AAYETNFTVS VDLLGHGCTT GISASDRSKT ILALIDPKID 
PSELGRPGHI FPLRAKDGGV LRRAGHTEAS TDLARLAGMK EAGVLVEILK EDGEMARLPD 
LIKIAERHQL KIISIKDLIA YRLSKESLIK EEVTINLPTQ WGDFKMTAYT QIDNYATHLA 
ISKGTWAADE PVLARVHSSC VTGDIFGSCR CDCGPQLHKA LEMIDKEGKG VVVYMNQEGR 
GIGLINKLRS YNLQDAGFDT VEANIKLGFK GDERDYGVGA QILRAQGVTK MRLMSNNPTK 
RAGLIGYGLE IVENIPIEIE SNIHNELYLK TKRDKMGHQI MKG