Gene Phep_3556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3556 
Symbol 
ID8254677 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand+ 
Start bp4230896 
End bp4231573 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content42% 
IMG OID644937207 
Productendonuclease III 
Protein accessionYP_003093809 
Protein GI255533437 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.848548 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAAAA AAGAAAGATA CCGGCTTTTT GTGGCCCATT TTTCTGCCAG GCAACCCAAT 
GCTGAAACAG AACTACATTA CAACAATCCC TTTCAACTGT TGGTTGCAGT GATTTTATCT 
GCACAATGTA CCGACAAGCG CATCAACCAG GTTACCCCTG CCCTATTCCA GCGTTTTCCA 
AATGCAAAAG CACTTGCAGA AACGACCCCT GATATAGTAT TTGATTACAT CAGAAGTGTA 
AGCTATCCGA ATAATAAGGC CAAGCACCTG GTAGGAATGG CCAATATGTT GTTACATGAG 
TTTAACAATG AGGTACCATC GGATGTTGAC CAGCTGCAGA AAATGCCCGG AGTTGGCCGC 
AAAACAGCCA ATGTGATTGC TTCCGTAATT TATAATGCAC CCGCAATGGC CGTTGACACC 
CATGTTTTCA GGGTAGCCAA CAGAATAGGG CTAACTAATG GAAAAACCCC CTTAGCAGTA 
GAAAAAGACC TGGTTAAAAA CCTCCCGGAA CACACCATCC ATGTAGCCCA CCACTGGTTA 
ATATTGCATG GCAGATATGT ATGTGTAGCA CGCTCACCTA AATGCAGTAT TTGTGAGATC 
GCACATTTTT GTAAATATTA TCAAAGCAAC AATAAAATAA CTAAAATAAT TAGTGATATT 
ACAGGTCAGG TAAAATAA
 
Protein sequence
MLKKERYRLF VAHFSARQPN AETELHYNNP FQLLVAVILS AQCTDKRINQ VTPALFQRFP 
NAKALAETTP DIVFDYIRSV SYPNNKAKHL VGMANMLLHE FNNEVPSDVD QLQKMPGVGR 
KTANVIASVI YNAPAMAVDT HVFRVANRIG LTNGKTPLAV EKDLVKNLPE HTIHVAHHWL 
ILHGRYVCVA RSPKCSICEI AHFCKYYQSN NKITKIISDI TGQVK