Gene Phep_3548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3548 
Symbol 
ID8254669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4221621 
End bp4222484 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content41% 
IMG OID644937199 
Productprotein of unknown function DUF161 
Protein accessionYP_003093801 
Protein GI255533429 
COG category[S] Function unknown 
COG ID[COG1284] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.979757 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGGGC ATATCAAAAC TAAAAAACTA AACTTTACCA AAAACATGTT TTTAATTACA 
TGCGGTATTG TGTCGGCCTG TTTTGGATTA AAAAGTTTTT TACTGCCCAG TGGTTTTATT
GACGGTGGGG TTACCGGGAT CTCGCTGCTG ATCAGCAACA TCACCGGACT AAAACTCTCC
TACCTCATCG TGGTCATCAA TATTCCCTTT GTAATTCTGG GTTACAGGCA AATAGGTAAA
GTTTTTGCTA TCAAAACTTC TGTTGCGATT GCTTTGCTGG CCATTTTACT GATCGTTGCC
CCTTTTAAAT CCATTACCCA TGACCCTTTA CTGATTGCCT TTTTTGGTGG ATTGTTTTTA
GGTGGTGGCA TTGGCCTGGC CATGCGCGGT GGTTGTGTAA TTGATGGCAC CGAAGTATTG
GCGTTGTACA TCAGTAAAAA AAGCACCCTT ACCGTTGGCA ACATTATCCT CATCCTGAAC
ATCCTTATTT TTTCGGTAGC AGCCATATTT TTAGGTATGG ACAAGGCTTT ATATGCCATT
CTTACTTATT TATCGGCCTC AAATACGGTT GATTATATTG TAAACGGAAT TGAGCAGTAT
ACCGGCGTTA CCGTGATCTC GGAGAAAAAC GAGAATATTA AAAAATTCAT TATCCACCAG
ATGAAAAGGG GGGTTACCAT ATATAAAGGC GAAGGTGGCT ACGGTATAAA AAAAGATATC
GATATTCTAT ATACAGTGGT CACAAAGCTG GAAATGGGAA AACTGCAGAC CGCTATCAGG
CAAATTGATC CGGATGCATT TGTTATACAA CAGCAGATTG CCGATATCAG AGGCGGGGTA
GTAAAACGCC AGGCCTTACA TTAA
 
Protein sequence
MRGHIKTKKL NFTKNMFLIT CGIVSACFGL KSFLLPSGFI DGGVTGISLL ISNITGLKLS 
YLIVVINIPF VILGYRQIGK VFAIKTSVAI ALLAILLIVA PFKSITHDPL LIAFFGGLFL
GGGIGLAMRG GCVIDGTEVL ALYISKKSTL TVGNIILILN ILIFSVAAIF LGMDKALYAI
LTYLSASNTV DYIVNGIEQY TGVTVISEKN ENIKKFIIHQ MKRGVTIYKG EGGYGIKKDI
DILYTVVTKL EMGKLQTAIR QIDPDAFVIQ QQIADIRGGV VKRQALH