| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3456 |
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| Symbol | |
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| ID | 8254576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4108263 |
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| End bp | 4110197 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644937108 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_003093711 |
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| Protein GI | 255533339 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.618512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.044476 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGATA CAGTATTATA TTCAAGGTTT TTAACACGTG AAGTTGCCAT AGGAGATGTC
CCAATGGGTG GTTTAAACCC CATCCGTATT CAGTCTATGA CTACTACAGA TACCATGGAT
ACCATAGGCA CAGTGGAGCA GACCATCAGA ATGGTGAATT CCGGTTGCGA ATATGTACGG
ATTACTGCCC CAAGTATGAA AGAGGCAGAA AACCTGGCCA ATATTAAAAA GGAACTGAGG
TTAAGGGGAT ATAACGTGCC CCTCGTAGCT GATATACATT TTACCCCGAA TGCAGCAGAA
GCAGCAGCAC GGATAGTAGA AAAGGTAAGG GTAAACCCAG GTAATTATGC CGATAAAAAA
CGCTTTGAAA ATATTGAATA TACCCATCAG GCTTATCAGG CTGAACTGGA TCGCATCTAT
AAGAAATTTA CACCTTTAGT AAAGATCTGT AAAGAATATG GTACAGCCAT GCGCATTGGC
ACCAACCATG GCTCACTTTC CGACCGCATC ATGAGCCATT ATGGAGATAC TCCCCGTGGC
ATGGTAGAAT CGGCCATGGA GTTCATCCGT ATGTGCGAAG ACCTGAACTA CTACAACCTG
GTCATTTCTA TGAAAGCCAG TAATACCCAG GTAATGGTAC AGGCCTACAG GCTGTTGGTA
GAAACTATGG TAAAAGAAGG TATGAATTAT CCTTTGCACC TGGGAGTTAC GGAGGCCGGT
GACGGTGAAG ACGGACGGAT CAAATCGGCG GTGGGCATTG GTACCTTACT TGAAGATGGT
CTTGGTGATA CGATCAGGGT CTCTTTAACT GAAGATCCTG AATTTGAGGC ACCTGTTGCC
AAAGCACTGG CAATGAGATA TGAAAAGCGT GCCCTTGATC TGTATGGAAA AATGCTGTTC
AGTGAAACAA AAACCATTGT TCCCGGGCAG CTTCCTTACT CTCCTTTCGA ATACCAGAGA
AGAGTTACAG TTCCGGTACA GCACATTGGG GGACATTTTC ACCCGGCGGT AATGCTGGAT
GTTAGCCATG AAAATTTAAA GGATCCTTAC TTTCTGGCTG CTGTGGGTTA TCAATACAGT
GCCGGACTGG ATAAGTACAA TATGGCCGAT CAGGCCTGTG ATATAGTTTA CCTGGGCGAT
CAACTGCCCT CATTTTCTTT TCCCGGAAAC TTAAAGCAGG TATATAACTA CAGTACCTGG
CTTTCCCTAA AGGACAAAAA CAACTGCCAT CCTTTGCTTT CCTATGATGA ATATCTGTCA
GTGGAGCTTC ATGATGAGCA ATTAAACCTG GTTAAAATTA CTGCTGAAAA TGCGCTGCAG
ACCGATCTTT CTGCTTTAAA AGATAAAGTA GTACTCGTAT TGGAAACTTC ATCATTAAAT
GGAGTGGCTG CTCAACGGGC ATTTTTCAAT GCGCTGATAG AAAAAGGGCT GCAGATACCG
GTTATCATTA AACGCAGTTA TACTGCTGTT AATACCGATG ACCTGATGTT ATATGCTGCA
ACGGACATGG GTGCATTGTT AACGGACGGA ATGGGGGACG GGGTGTGGAT TGATGCTGAT
GCTTTGCTGG GTTTGTCTTT AATTAATGCT ACCAGTTTCG GAATTTTGCA GGCCACACGT
ACCCGTATCT CTAAAACAGA ATACATTTCA TGTCCAAGCT GCGGAAGGAC GTTGTTCGAT
TTACAGGAAA CCACGCAGTT GATCCGTTCC CGTACTGACC ATTTAAAGGG TATCAAGATT
GGCATTATGG GCTGTATCGT AAATGGTCCT GGTGAAATGG CAGATGCAGA TTATGGTTAT
GTAGGGACCG GACCCGATAA AATAACATTA TACCGCGGTA AGGAAGTGGT GAAAAAGAAT
GTAAATGCTG CCCGGGCACT GGATGATTTG ATCGATTTGA TCAAGGAGGA TGGAAATTGG
GTTCAAAAAG TGTAA
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| Protein sequence | MEDTVLYSRF LTREVAIGDV PMGGLNPIRI QSMTTTDTMD TIGTVEQTIR MVNSGCEYVR
ITAPSMKEAE NLANIKKELR LRGYNVPLVA DIHFTPNAAE AAARIVEKVR VNPGNYADKK
RFENIEYTHQ AYQAELDRIY KKFTPLVKIC KEYGTAMRIG TNHGSLSDRI MSHYGDTPRG
MVESAMEFIR MCEDLNYYNL VISMKASNTQ VMVQAYRLLV ETMVKEGMNY PLHLGVTEAG
DGEDGRIKSA VGIGTLLEDG LGDTIRVSLT EDPEFEAPVA KALAMRYEKR ALDLYGKMLF
SETKTIVPGQ LPYSPFEYQR RVTVPVQHIG GHFHPAVMLD VSHENLKDPY FLAAVGYQYS
AGLDKYNMAD QACDIVYLGD QLPSFSFPGN LKQVYNYSTW LSLKDKNNCH PLLSYDEYLS
VELHDEQLNL VKITAENALQ TDLSALKDKV VLVLETSSLN GVAAQRAFFN ALIEKGLQIP
VIIKRSYTAV NTDDLMLYAA TDMGALLTDG MGDGVWIDAD ALLGLSLINA TSFGILQATR
TRISKTEYIS CPSCGRTLFD LQETTQLIRS RTDHLKGIKI GIMGCIVNGP GEMADADYGY
VGTGPDKITL YRGKEVVKKN VNAARALDDL IDLIKEDGNW VQKV
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