Gene Phep_3360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3360 
Symbol 
ID8254479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3984579 
End bp3986225 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content41% 
IMG OID644937012 
Producttype I phosphodiesterase/nucleotide pyrophosphatase 
Protein accessionYP_003093616 
Protein GI255533244 
COG category[R] General function prediction only 
COG ID[COG1524] Uncharacterized proteins of the AP superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.263432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.164885 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAATCA GGAAATTATT ATTGTGGATA TTTTTTGTCA GTTCCTTATC CAGTATAGCT 
CAAAATAAAA GTTCAAATAA ATTGCCCCGC CCTAAGCTGG TAGTGGGGCT GGTAGTAGAC
CAGATGCGTT GGGATTATTT GTATAGATAT TACGAGCGCT ATCAGCAAAA TGGGTTCAAG
CGCTTGCTTA ACGAAGGGTT TTCATGTGAA AATACTTTTA TCGACTATGT ACCTACCGTA
ACTGGTATAG GCCATAGTAC CATTTATACT GGCTCGGTTC CTGCAATACA TGGTATTGCG
GGTAATGACT TTATCATCAA TGCTACAGGT AAAACCGTTT ACTGCGCAGG CGATTCAACG
GTCGAAACCG TGGGTAGTAA ATCTAAGTCC GGCAAGATGT CGCCAAGAAA TTTACTGGCC
AATACCATTG GAGATGAATT GAAACTGGCT ACAAATTTTA AATCTAAAGT AATTGGTATT
GCATTGAAAG ACAGGGGCGG TATTTTACCT GCTGGCCACA GTGCCGATGC AGCCTATTGG
TTTGATTCAG GATCAGGAAA CTGGATTACA AGCACCTATT ATATGAATGA TCTGCCTGCC
TGGCTGAAAA AGTTTAATGA AAAGAAACTA CCTGCAAAAT ACCTAAGCGA GGATTGGAAT
ACCTTGTATG ACATTAAAAC TTATACACAG AGTACTAAAG ATGACACCCC TTATGAAGGT
TTATTTGATG GACAAAATAC ACCTACATTT CCTATAAAAA CTTCTCAGAT GATGAGTAAA
GGGTATGACA TACTCCGTTC TACCCCTTAT GGAAGCACAT TTACCCTGGA CCTGGCAAAA
GCAACTATAG ACAATGAGTA TTTGGGACAG GGTGAATTTA CCGATATGCT GGCCATAAGC
ATTTCGCCAC CTGATTATGT AGGGCATAAA TTTGGCGTAA ATGCCATAGA GACTGAAGAT
ACCTATTTAA GATTGGACAA AGACATTGCT GAATTTTTGA CGTATTTGGA TGCTAAGGTA
GGGAAAGGGA ATTATACCTT GTTTTTAAGT GCTGATCATG GAGCTGCCCA TAATGTTAAG
TTTAGTAACG ATAATAAATT ACCTTCTTCC AACTGGTCTG GCAGTAAGGT GCAACGCGAA
ATGAACCAGG CCCTGGAAGA TGTTTTTAAA GTGAAAGACA TTGTATTGAG TATGATGAAT
GCCCAGGTCC ATTTTAACTA TAATGTGATC AAATCCAATA AGCTTAATGA AGAGGCCATC
AGAAAAGTGT GCGTTGCCTA TTTAAAAACT CAGAAAGAAA TCGCTTTTGT TGTAGATCTG
GATAAAGTGG GGGATGCCAG CGTGCCTGAG GAAATAAAAA GAAGGATTAT AAATGGGCAT
AATGCACATC GCTCAGGGGG GATACAGCTT ATCCTGGATC CCGCAGTTTT TTCAACAGGA
CGTACCGGTA CCTCGCACAG TGCGTGGAAC CCTTATGACT CCCACATTCC CCTGGTTTGG
ATGGGCTGGG GCATCAGTCA GGGACGTACA AACAGACAAA CAAATATGAC AGATATTTCT
GCTACACTGG CTGCATTGCT TAGGATCCAA ATGCCGAACG GCTGTATTGG TTATGCCATT
AACGAAGTAT TGAAAAAAGA CAATTGA
 
Protein sequence
MRIRKLLLWI FFVSSLSSIA QNKSSNKLPR PKLVVGLVVD QMRWDYLYRY YERYQQNGFK 
RLLNEGFSCE NTFIDYVPTV TGIGHSTIYT GSVPAIHGIA GNDFIINATG KTVYCAGDST
VETVGSKSKS GKMSPRNLLA NTIGDELKLA TNFKSKVIGI ALKDRGGILP AGHSADAAYW
FDSGSGNWIT STYYMNDLPA WLKKFNEKKL PAKYLSEDWN TLYDIKTYTQ STKDDTPYEG
LFDGQNTPTF PIKTSQMMSK GYDILRSTPY GSTFTLDLAK ATIDNEYLGQ GEFTDMLAIS
ISPPDYVGHK FGVNAIETED TYLRLDKDIA EFLTYLDAKV GKGNYTLFLS ADHGAAHNVK
FSNDNKLPSS NWSGSKVQRE MNQALEDVFK VKDIVLSMMN AQVHFNYNVI KSNKLNEEAI
RKVCVAYLKT QKEIAFVVDL DKVGDASVPE EIKRRIINGH NAHRSGGIQL ILDPAVFSTG
RTGTSHSAWN PYDSHIPLVW MGWGISQGRT NRQTNMTDIS ATLAALLRIQ MPNGCIGYAI
NEVLKKDN