| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3342 |
|---|
| Symbol | |
|---|
| ID | 8254461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3962238 |
|---|
| End bp | 3964148 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644936994 |
|---|
| Product | DEAD-like helicase |
|---|
| Protein accession | YP_003093598 |
|---|
| Protein GI | 255533226 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | [TIGR00376] DNA helicase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.182611 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTACT TTAAGAAACT GCTTGATCTG CTTAAAACGG AGCGTGAAGA GGACTTACAA
GCATATATCA AACAGAAGGA AACCCTTTCT GTTGCAGAAC GCAGAGCACT TGGGTTAACC
TGGTATCCTA TTGCTATCCG AGGTTCGGAA ATGAGCAGGG GTGACTATTT AACTGTTGAG
GTTGAACGGA CTACGCACCA TGATTTGCAA CATCAGCTTC GGTTTGGCAT GCCAGCGGTA
CTGTTTTCTA ATCACGATCC TAAAAATGAT AAGGTTGAGG GGCTGATTGC TTATCAGGGA
GGAAGTCGTT TAAAGATCAC TTTGTGTACG GATGAACTGC CAGATTGGGC AAGGAACGGT
AAATTAGGCA TTGATGTACT GTTTGATGAT CACAGTTATG ATGAAATGCA GGCAGCTGTT
AAACGTGCTT CAGTACAGAA TGAGCAGGCT GACAATCACC ATTTAATAAA GATATTGACG
GGGATAGATA AGCCTTCGTT TGCAGAAGAT GTTGTTCATT ATCCAGTCGC TAAATTAAAT
AAAGTGCAGC AACTTGCTGT GTACCATATT GTTGCTGCAC AGCAACTCGC TATTGTACAT
GGTCCGCCGG GAACAGGTAA GACCACTACA CTTGTGCAGG CTGTTAAGAC AATGATTAAA
CAGCATGGAA GGCAGATTTT GGTAGTTGCA CCGAGTAATA CAGCGGTAGA TTTATTAAGT
GAAAAGTTAG CTGACGAGGG ATTGAATGTT TTACGGATTG GTAATCCGGT AAGGGTATCA
GAAAAATTGT TCTCTTTAAC TTTGGATAGT AAAATGTCAG CTCATGCCAG CATAAAAGAG
GTTAAGGATT TGAAAAAGCA GGCTGCGGAG TACAAAAAGA TGGCCCATAA ATACAAAAGA
AATTTTGGGA GGGCAGAAAA GGAACAGCGT AAGGCACTTT TTGACGAGGC GCATAAGCTG
ATGAAAGCTG TAGCCGGTGC CGAACAATAT ATAATAGAAG ATCTGATAGG GAAAGCGCAG
GTAGTTACAG CAACTTTAGT AGGCGCAAAT CATTATACTA TTAAAGATAG GAAATTTGAT
ACCGTAGTAA TTGATGAAGC CGGACAGGCA TTGGAACCTG CATGCTGGAT ACCAATATTG
AAGGCGCAAA AGGTGATTCT GGCAGGCGAC CATTGTCAAT TGCCGCCCAC CATTAAGTCT
AATGACGCTG CGAAAGCAGG TTTAAGCACC ACTTTGCTTG AAAAATGTAT TGCTTTGCAT
CCAAATGCAG TTGTTTTGCT GGAAGAACAG TACAGGATGC ATACGCAGAT TATGGCCTAT
TCTTCGAAGG TCTTTTACGA AGGAAAATTA AAGGCGCATG CGGCTGTTGC CGGGCATTTG
CTATTTCCGG GAGATACTGC ATTAAACTTT ATTGATACTG CCGGCTGTGG ATTTGAAGAA
CAAAGGGAAG GAACAAGTAT TTATAATTCT GAAGAAGCTG TATTTTTACT GAAACACTTA
ACACAGTTGG TGCTGAAGCT GGCTGAGGTG TATGTTGCTG AAAATTTTCC TTCAATAGGA
GTGATTTCGC CCTATAAACA ACAAATCTAT ATATTAAAGG ATCTGTTGTT GAACCATCCC
GTTTTGCAGC TGTATATTGA AAAAATTTCA GTCAATACAA TAGACAGCTT TCAAGGCCAG
GAGCGGGACA TTGTCTACAT CGGGATGACC AGAAGTAACA ATGAGGGAGT GATTGGCTTT
TTATCGGATA TCCGCAGGAT GAATGTAGCT ATGACCAGGG CCCGTAAAAA GCTGGTGGTT
ATAGGAGACA GTGCAACTTT ATCCAGATTG CCTTTTTATT CGGATTTTAT TGCTTATGCA
GAAAGCATTG ATGCTTACCG GAGTGCATGG GAATTTGCTG ATGCAGACTA A
|
|---|
| Protein sequence | MPYFKKLLDL LKTEREEDLQ AYIKQKETLS VAERRALGLT WYPIAIRGSE MSRGDYLTVE
VERTTHHDLQ HQLRFGMPAV LFSNHDPKND KVEGLIAYQG GSRLKITLCT DELPDWARNG
KLGIDVLFDD HSYDEMQAAV KRASVQNEQA DNHHLIKILT GIDKPSFAED VVHYPVAKLN
KVQQLAVYHI VAAQQLAIVH GPPGTGKTTT LVQAVKTMIK QHGRQILVVA PSNTAVDLLS
EKLADEGLNV LRIGNPVRVS EKLFSLTLDS KMSAHASIKE VKDLKKQAAE YKKMAHKYKR
NFGRAEKEQR KALFDEAHKL MKAVAGAEQY IIEDLIGKAQ VVTATLVGAN HYTIKDRKFD
TVVIDEAGQA LEPACWIPIL KAQKVILAGD HCQLPPTIKS NDAAKAGLST TLLEKCIALH
PNAVVLLEEQ YRMHTQIMAY SSKVFYEGKL KAHAAVAGHL LFPGDTALNF IDTAGCGFEE
QREGTSIYNS EEAVFLLKHL TQLVLKLAEV YVAENFPSIG VISPYKQQIY ILKDLLLNHP
VLQLYIEKIS VNTIDSFQGQ ERDIVYIGMT RSNNEGVIGF LSDIRRMNVA MTRARKKLVV
IGDSATLSRL PFYSDFIAYA ESIDAYRSAW EFADAD
|
|---|
| |