| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3318 |
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| Symbol | |
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| ID | 8254437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 3935733 |
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| End bp | 3937745 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644936970 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_003093574 |
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| Protein GI | 255533202 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.563923 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGGAT CTGAAGTAAA AACCAATATG GATGCCTTGG TTAAGGAGCT TAACCAGCAC
AGTTACAATT ATTATGTTTT GGCAATGCCC ACCATTGCAG ATTACACTTT TGATAAAAAA
CTGGAAGAAC TTGCACAACT GGAGCTTGCA TACCCCGAGT TTGCAGATCC CAATTCGCCT
ACCCGGAAAG TTGGCGGCGA CATTACGAAA ATTTTCACCA CGGTTCCGCA CAAATGGCCA
ATGCTATCAC TTGGCAATAC TTACAATGAA CAGGACCTCC GCGACTTTGA TGAACGCATC
AAAAAAGCCA TAGGTGAAAG TTTCGAATAT GTTTGTGAAC TTAAGTTCGA CGGACTTTCC
ATCAGCCTTA CCTACGATGG ATCAAAACTG GTTAGAGCAG TAACACGCGG AGATGGTGCC
AAAGGCGACG ATGTGACCGC CAATGTAAAA ACCATAAATA CTATTCCACA TCAGTTAAAA
GAAGGAGATG TACCCCCTCT ATTTGAAATC AGGGGTGAAA TTTTTATGCA CCGTGCTGCC
TTTGAAAGGT TAAATAAGGA ACGCGAGGAA CTTGGCGAGG TCCAATATGC CAATCCCAGG
AACTTTGCGG CCGGAACCGT TAAGATGCAG GACTCTAAGG AAGTGGCCAA ACGTCCCCTG
GATTGTTTCC TTTATTCACT AAATACAGAC AAAAATTATT TTAAAACTCA TTGGGAAAGC
TTACAGGCAC TAAAGAGGTG GGGATTTAAT GTTTGTGAAC ATACCAAACT GACCAATAGC
ATTGAAGATG TACGCTCATT TATAAAACAC TGGGAGAACG AACGTTTCAA ATTATCTTAT
GACATAGACG GAATTGTAAT TAAGGTAAAC AGCTATGCAC AGCAACAGGA ACTGGGCTTT
ACGGCCAAAT CTCCACGCTG GGCCATTTCC TATAAATACA AAGCACAGGA AGTCGAAACC
ATTTTGGATA AGGTAACCTA CCAGGTGGGC CGGACTGGTG CCGTTACCCC TGTTGCCAAC
CTGAAACCTG TACAACTTGC CGGAACAACC GTAAAAAGGG CAACATTGCA CAATGCCAAT
GAAATAGAAA GGCTGGACTT ACACGAGGGG GACAGCGTCT TTGTTGAAAA AGGCGGAGAG
ATCATCCCAA AAATCATGAA CGTAAACCTG GATAAACGCA AGGCCGGGGC ACTTAAGATT
ATATATCCTA CCGTATGTCC GGAATGCGCT ACGCCCCTGA TCAGAAAAGA AGGTGAAGTG
GCTTTTTACT GTCCGAATGA TGAGGCCTGT CCGCCACAGA TCATTGGAAA AATCCAGCAC
TTCATCAGCA GAAAGGCCAT GAACATTGAT GGCCTCGGCG ACGAGACCAT CGAAACCTTT
TATCAGCGCG GATTAATTGC CCACATCAGT GACCTCTATA CCTTACATGA AAAAGCAGAG
GAACTGAAAA CGCTGGAACG TTTTGGTGAG AAATCTATTG AAAATATGCT GCATGGAATT
GAGCTTTCTA AGCAAATGCC CTTTGAGAAA GTATTATTTG GCCTTGGAAT AAGGTATGTA
GGTGAAACAG TGGCTAAAAA ACTAGCTTAT GGTGTAAAAA ATGTTGACAA GCTTGCTTCA
GCAAGCCTGG AAGAATTGAC AGCAATAGAT GAAATTGGCC AGCGTATAGC GGAAAGTATT
ATTGAATATT TTGGCAAAGC AGAACATTTA CATCAAATAA ACCTTCTAAA ATCATACAAT
TTAAAATTTG AAGTCGCAGA AAATGAAATT ACACTGCAAA GTGATAAATT AACTGGAAAA
ACATTCGTAA TTTCGGGCGT TTTTGAGAAT TATAGCAGAG AAGAACTCAA AGACATGATT
GAAAGTAATG GTGGTAAGAT TTTAAGCGGG ATCTCTGCAA AACTTAATTA TCTTGTTGCC
GGAGATAACA TGGGGCCATC TAAACTCGAA AAAGCGAAAA AGTTAAATGT CCCGCTTATT
TCGCAGGAGG ATTTATTAGA GCTATTGAAG TAA
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| Protein sequence | MSGSEVKTNM DALVKELNQH SYNYYVLAMP TIADYTFDKK LEELAQLELA YPEFADPNSP
TRKVGGDITK IFTTVPHKWP MLSLGNTYNE QDLRDFDERI KKAIGESFEY VCELKFDGLS
ISLTYDGSKL VRAVTRGDGA KGDDVTANVK TINTIPHQLK EGDVPPLFEI RGEIFMHRAA
FERLNKEREE LGEVQYANPR NFAAGTVKMQ DSKEVAKRPL DCFLYSLNTD KNYFKTHWES
LQALKRWGFN VCEHTKLTNS IEDVRSFIKH WENERFKLSY DIDGIVIKVN SYAQQQELGF
TAKSPRWAIS YKYKAQEVET ILDKVTYQVG RTGAVTPVAN LKPVQLAGTT VKRATLHNAN
EIERLDLHEG DSVFVEKGGE IIPKIMNVNL DKRKAGALKI IYPTVCPECA TPLIRKEGEV
AFYCPNDEAC PPQIIGKIQH FISRKAMNID GLGDETIETF YQRGLIAHIS DLYTLHEKAE
ELKTLERFGE KSIENMLHGI ELSKQMPFEK VLFGLGIRYV GETVAKKLAY GVKNVDKLAS
ASLEELTAID EIGQRIAESI IEYFGKAEHL HQINLLKSYN LKFEVAENEI TLQSDKLTGK
TFVISGVFEN YSREELKDMI ESNGGKILSG ISAKLNYLVA GDNMGPSKLE KAKKLNVPLI
SQEDLLELLK
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