| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3316 |
|---|
| Symbol | |
|---|
| ID | 8254435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3933616 |
|---|
| End bp | 3934902 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644936968 |
|---|
| Product | tyrosyl-tRNA synthetase |
|---|
| Protein accession | YP_003093572 |
|---|
| Protein GI | 255533200 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.355813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAATT TTGTAGAAGA GCTACGCTGG AGAGGCATGT TGCAGGATAT GATGCCTGGT
ACTGAAGAAA AATTGAATGA AGGAATGACT GCGGGGTATA TTGGTTTCGA TCCTACTGCC
GACTCATTGC ATGTAGGGCA TCTTACGCAG ATCATGACAC TTATCCATTT TCAGCGTGCG
GGGCATAAGC CTTATGCACT GGTGGGAGGG GCAACAGGAA TGGTAGGCGA TCCCTCAGGT
AAATCAGCCG AAAGGAACCT GCAAACAGAA GATATGGTTG AACATAACCT GGCAGGCATG
AAACGTCAGC TTTCAAGATT TTTGAAATTT GAAGCTGCCG GCAACGGAGC TGTAATGATC
AATAATGCCG ATTGGTTTAA AGATATGGGC CTGTTTGATT TTATCCGGGA TATCGGCAAA
CACATCACGG TAAACTATAT GATGGCAAAG GATAGTGTTA AAAGGCGTCT TGAGGGAGAT
TCAGGTTTGT CATTTACAGA GTTTTGCTAC CAATTGATCC AGGGTTATGA CTTTTATTAT
TTATGGAAAC ATCACAATTG TCTGGTCCAG ATGGGTGGTT CCGATCAGTG GGGCAATATC
GTTACCGGAA CTGAACTGAT CAGAAGAAAA GATGCCGGAA CAGCTTATGC CATTACCACC
CACCTGATTA AAAAAGCAGA TGGGACAAAA TTTGGTAAAA CCGAGAGTGG TGCAGTATGG
CTGGATGCAG AAAAAACATC ACCCTATAAG TTTTACCAAT TCTGGTTAAA CGCATCAGAT
GATGATACAA AAAAATGGAT CAGGATTTTT ACGTTAAAAA CAAAAGAGGA GATAGAGACG
CTGGAAAATG AGCACAATGC TGCTCCACAT CTGCGCATAC TGCAAAAGGC GCTTGCCGAA
GATATCACCA TCAGAACGCA TTCTGAAGAA GCACTGGAAA CAGCATTGAA AACCTCAGAT
TTTTTGTTTG GCAATGGCTC ACTGGAGTTT TTTAAAACCC TATCTGTTGC ACAGGTATTT
GAGATATTTG AAGGGATTCC CCAATTTGCC ATTTCAAAGG ATGAACTGGA GCAAGGTATA
GATGCAGCTA CACTACTGGC TGAAAAATCA AGTGTATTTG CCTCTAAAGG AGAAGCCAAG
AAACTGATAC AAGGTGGTGG CGTATCCATA AATAAGGAAA AATTAAAAGA CCCGACGGAT
CAGTTGAGTG CAACTGATCT TTTAAACGGA CAGTTCATTG TTGTTCAGAA GGGTAAGAAG
AATTATTACC TGTTGACTGC AAATTAA
|
|---|
| Protein sequence | MTNFVEELRW RGMLQDMMPG TEEKLNEGMT AGYIGFDPTA DSLHVGHLTQ IMTLIHFQRA
GHKPYALVGG ATGMVGDPSG KSAERNLQTE DMVEHNLAGM KRQLSRFLKF EAAGNGAVMI
NNADWFKDMG LFDFIRDIGK HITVNYMMAK DSVKRRLEGD SGLSFTEFCY QLIQGYDFYY
LWKHHNCLVQ MGGSDQWGNI VTGTELIRRK DAGTAYAITT HLIKKADGTK FGKTESGAVW
LDAEKTSPYK FYQFWLNASD DDTKKWIRIF TLKTKEEIET LENEHNAAPH LRILQKALAE
DITIRTHSEE ALETALKTSD FLFGNGSLEF FKTLSVAQVF EIFEGIPQFA ISKDELEQGI
DAATLLAEKS SVFASKGEAK KLIQGGGVSI NKEKLKDPTD QLSATDLLNG QFIVVQKGKK
NYYLLTAN
|
|---|
| |