| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3310 |
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| Symbol | |
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| ID | 8254429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3925651 |
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| End bp | 3928566 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644936962 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003093566 |
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| Protein GI | 255533194 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.183606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTACAA AAGCGATTTT TACACTTTTG CTAGCTATTA CCGGATTTAC GGTATATGCC
CAAAGTGTCG TGGTTAGTGG CTTGGTTACC GATAAGCAGA CTAAACAACC AATACCAGGT
GTTGGAATCA CAGTAAAAGG CACTACCAGC GGCACTGCTA CCGGTGCAAA TGGCAGATAT
TCGTTTAGTA CAAGTCAGAA ACCCCCATTT GTCCTCGTTA TTTCTTTCCT GGGTTATGCA
TCAATAGAGC AGGAGATTAC CGGTAATACA TCTGATTTGA TTGCCGAACT GGAACCTACG
GCAATTTTGG GACAGGAGGT TGTTATTTCA GCTTCGAGAA CTCCTGAACG CATCCTGGAA
TCACCCGTAA CCATTGAAAG AATTGGTGCT GCGGCAATTA AGGAACTGCC CAGCGCTTCT
TTTTACGATG CACTTACCAG TTTAAAAGGG GTAGAAGCGA GTACGCAAAG TTTAACTTTT
AAATCTATCA ATACCCGTGG GTTCAACTCT AACGGCAATA CCCGCTTTAA TCAGTTTGTT
GATGGAATGG ACAACCAGGC ACCCGGATTA AATTTCTCTG TGGGCAATAT TATTGGTTTG
TCGGAATTGG ATATAGACAA TGTGGAATTG CTGCCTGGTG CTTCCTCTGC TTTATATGGT
GCCGGGGGAA TCAATGGTAC ATTGTTAATG ACTTCAAAGA ACCCCTTTAA GTATCCGGGC
GCGAGTTTCC AGTTCAAAAC TGGGGTAAAC CATGTAAATG ACGACAATTC TGCAGTACAG
CAGTTTAACC AGCTTGACGT GCGTGTGGCC AAAGCCTGGA ACAACCGCTT TGGTTTTAAA
GCTACCTTTT CTTATCTGCA GGCAAAAGAC TGGTTCGGAA ATGATTCCCG GAATTTTGAC
CGGGTAAATA ATGTTTTAAA ACCAGGAGAC AGAAATTCAG ACCCGAACTA TGATGGTATC
AACGTTTATG GCGATGAAGT GAGCCAGAAT ATGCGCAACC TGGTACAGGG AAGCATAGAG
CCTGCAATCC GGGCTGGAAT ATTACAGGCA TCGGGCAACC AATTCGACCC GAGGCTTGCG
TTGGGTAATG TTCCCGCAGG ATCAAGTTAT CCTGTTTATT TAAATTTTAT CAATACCAAT
GTGCCTGCTG CACTTCGTCC CGCAGTTATC AATCAATATC TCCCTTTTTA TTACGGCCTT
ACCTACCCTG CATTATTACC TAACCAATCT ATTTCCAGAG ATGGTTATAA TGAAGCAGAT
CTGGTAGATT ACAATACAAA ATCTTTAAAA GCTTCAGGTT CATTTAATTA TAAGATAACC
AGTACGATAG AAGCAATAGC GCAACTAACA TGGGGAAGTG GAACTTCTGT ATATACAGGT
GCCGACCGCT ATTCTTTGCG CAACTTTAGT ATTGGTCAGT ATAAACTGGA ACTAAAAGGT
GAAGATTTCT TTTTAAGAGG TTATACCACA CAGGAACGAT CTGGTGATTC TTATATCTCT
TCCGTTTTGG GTGTGTCTAT TAATGAAGTA GCAAGCCCCA ACAATACCTG GTTTCCGGCT
TATATTGGTA GTTTTATAGG TGCACGGTTG GGCGGCCAAT CGGTAGATGC GGCACATGGA
ACGGCCAGGA CAGCTGCAAA CAGCACAGGA CGGGGACGTC TTTTGCCCGG AACTGTTGCC
TTTGAAAATG TCAAAAATCA AATCATGAAT ACGAACATCA GTGCTACCAA TATCAATCTC
ACTGATCCTT CAAAGAGTGT ATATGGGGCA AGGTTTGACG ATAAGACCAA TTTGTATCAT
TATGAAGGGA TGTATAACTT CAGCAATGCA TTAAATAATG TAGTTGAACT GCAGATTGGC
GCTTCGTCAA GGCTGTATCA GCTGCGTTCA GGTGGAACTA TTTTTGACGA CCTTAACGAA
GACCTGAACA TCAATGAATA CGGAGCTTTT GCCCAGCTGG GTAAGAAACT ATTTAAGGAT
AAGTTTAAAC TGACTTTTGC CGGGCGGTAT GACAAGAGCA CAAATTTTGA AGGCAGGTTT
ACGCCAAGGA TTACAGGGGT GCTCACTGTA GCCGAAAACA ACAACATCCG TGCTTCTTAT
CAGACAGGAT ACCGCAATCC GACTACCCAA AACCAATATA TCGATCTTTC TGTACTTGGC
GGAGCTACAC GGCTTATTGG TGGTTTGCCA AGAAGTTTGA ACAAATATAA TCTGTATGCC
GATAAAGGTG TTTTAAGGAA AGATTATACA GCTTACCTGG CTTCTGTAGC ATCAAGCCCA
ACCAATACAG GTGATCCAAG TTTATTGGTA CCCTATACAT TTGATGCCAA AGGGCTGCGT
CCTGAAAGTG TACAATCTTA CGAATTGGGA TATAAAGGCT TGATCAGTAA ACAATTGCTG
ATAGATGCTT ATGGATATTA CAATACCTAT AAAGATTTTA TCACTGCCAT TACACTGTTC
AGGGGCGGTA CAAGTTATGG TGTGCCGGTA AATGCAGCAG GTAATGTAAA TACTTATGGG
GCAGCATTAG GGCTGGATTA TTTGTTGAAT AAATATACTT TGAGCGGAAA CGTTTCCTAT
AACCAGATCG GTGATTTGCC GGCCGATTAT GACAATGACT TTAATACACC TAAAATACGT
TATAACCTGG GTCTTGCGAA CAGGGAGATC ATTAAAAATG TGGGTTTCAA TGTTCAGTAC
CGCTGGCAGG GTAAATATCA CTGGTTCTCC TCTTTTGTAG TAGGCGATGT GCCGGCTTTT
TCTACATTTG ATGCCCAGGT TAATCTAAAG GTTCCTTCGG TCAATTCGAT GATCAAGATT
GGGGGGTCAA ACATTTTAAA TAAATATTAC GTTACCTCTT TTGGTAACCC TGCAATAGGT
GCACTTTATT ATGTATCCTA TACGTTTAAT CCTTAA
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| Protein sequence | MFTKAIFTLL LAITGFTVYA QSVVVSGLVT DKQTKQPIPG VGITVKGTTS GTATGANGRY
SFSTSQKPPF VLVISFLGYA SIEQEITGNT SDLIAELEPT AILGQEVVIS ASRTPERILE
SPVTIERIGA AAIKELPSAS FYDALTSLKG VEASTQSLTF KSINTRGFNS NGNTRFNQFV
DGMDNQAPGL NFSVGNIIGL SELDIDNVEL LPGASSALYG AGGINGTLLM TSKNPFKYPG
ASFQFKTGVN HVNDDNSAVQ QFNQLDVRVA KAWNNRFGFK ATFSYLQAKD WFGNDSRNFD
RVNNVLKPGD RNSDPNYDGI NVYGDEVSQN MRNLVQGSIE PAIRAGILQA SGNQFDPRLA
LGNVPAGSSY PVYLNFINTN VPAALRPAVI NQYLPFYYGL TYPALLPNQS ISRDGYNEAD
LVDYNTKSLK ASGSFNYKIT STIEAIAQLT WGSGTSVYTG ADRYSLRNFS IGQYKLELKG
EDFFLRGYTT QERSGDSYIS SVLGVSINEV ASPNNTWFPA YIGSFIGARL GGQSVDAAHG
TARTAANSTG RGRLLPGTVA FENVKNQIMN TNISATNINL TDPSKSVYGA RFDDKTNLYH
YEGMYNFSNA LNNVVELQIG ASSRLYQLRS GGTIFDDLNE DLNINEYGAF AQLGKKLFKD
KFKLTFAGRY DKSTNFEGRF TPRITGVLTV AENNNIRASY QTGYRNPTTQ NQYIDLSVLG
GATRLIGGLP RSLNKYNLYA DKGVLRKDYT AYLASVASSP TNTGDPSLLV PYTFDAKGLR
PESVQSYELG YKGLISKQLL IDAYGYYNTY KDFITAITLF RGGTSYGVPV NAAGNVNTYG
AALGLDYLLN KYTLSGNVSY NQIGDLPADY DNDFNTPKIR YNLGLANREI IKNVGFNVQY
RWQGKYHWFS SFVVGDVPAF STFDAQVNLK VPSVNSMIKI GGSNILNKYY VTSFGNPAIG
ALYYVSYTFN P
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