Gene Phep_3259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3259 
Symbol 
ID8254378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand+ 
Start bp3869680 
End bp3870381 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content39% 
IMG OID644936912 
ProductGntR domain protein 
Protein accessionYP_003093516 
Protein GI255533144 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.847786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0347939 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAGTA TTGCCGAATC ATTTCAACCA GTAGACACCA GTTCACTGGT TGATAAAGTA 
GAAGCTAACC TGGTGCAGTT GTTGCGTGAC AGAAAATTAA AAGTTGGTGA TATCATTCCT 
ACAGAATTGG ACTTATCCAA AACCCTTGGG GTAAGCAGGA CGGTTGCCCG CGAAGCCATT 
CTGAGATTAA GGATGATGGG ACTGATCGAA ACCAAGAAGA AAAAAGGATC GGTAATTACC 
AGCCCTGATA TTTTCGGGAT CATGAGCAAA AGTATGAACC CACATATCCT TGATCAGGAT 
ACTTTAAAAG GCATATTTGA GATCAGGCTG GCCCTTGAAA TTGGAATGGC TGATTTTCTT 
TTCCAGCGCA TTAAGCCTGA AGATATTGAA GAACTTAAAG AAATCATAAA AAACGAGCCC 
GACACTTCAC AAGACTATAT CTTTCATATT GACCATGAAA TCGTGTTTCA TGGAAAACTT 
TATGAAATTA CCGGAAATGA AACGCTCAAA ACATTTCAGA AAATGCTTTT ACCGGTGTTT 
GATTATGTTC ATAATAGTGG TTTACTCAAA AAACAGACAC AGATCCATAA ATTTGTTTCG 
CATAAAGGAT TGGTTGACAT CCTGGAAAAC GGTTCTCCTG AACTGTTCAG GAATGCCATG 
CGCAATCACC TGGAAAACCA TTTTGCCAGG TTGTTTGAAT AA
 
Protein sequence
MESIAESFQP VDTSSLVDKV EANLVQLLRD RKLKVGDIIP TELDLSKTLG VSRTVAREAI 
LRLRMMGLIE TKKKKGSVIT SPDIFGIMSK SMNPHILDQD TLKGIFEIRL ALEIGMADFL 
FQRIKPEDIE ELKEIIKNEP DTSQDYIFHI DHEIVFHGKL YEITGNETLK TFQKMLLPVF 
DYVHNSGLLK KQTQIHKFVS HKGLVDILEN GSPELFRNAM RNHLENHFAR LFE