Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3258 |
Symbol | |
ID | 8254377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3866206 |
End bp | 3869505 |
Gene Length | 3300 bp |
Protein Length | 1099 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644936911 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003093515 |
Protein GI | 255533143 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.363911 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0250929 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACAAT TCTATTTAAA AACAATTGTT TTGATGTTGT TCCTGCTTTC AACCGGGGCG TATGCACAAA ACAAAAGAGT AACCGGAACA GTTTCCGGCG AAGATGATGG ACTTTCAATC CCGGCAGTAA GTGTTGTGGT AAAAGGAACC AAAGCCGGAA CGCAAACCGA CATGAACGGC AAGTTTAGTA TCGATGCCAA TGCGAATGAC ATTCTTGTAT TTACTTATGT GGGTTATTTG ACCCAGGAAA TTAAGGTAGG GAATAATATA AGTCTAAAAG TGGTGTTAAA ATCTACATCA GCCAATCTTG ATGAGGTGGT TGTGGTAGGT TATGGTACGC AAAACCGTCG CAACGTTACG AGTTCAATTT CAAAATTGGA TAAGGAAGTG CTTGCCAATG CGCCAAGAGC CAATCTAGGT ACTGCTTTAC AGGGCTCAAT CCCTGGTGTG CAGGTGGCTA CCAGAAGTGG ACAGCCTGGG GCAGGTCCTG CAATTACACT GCGTGGGGGG GCAAGTATCA ACAGTCCGGG TGGACCACTT GTTATTGTTG ATGGTGTGAT CCGTGATTAC AATGATATTT CTTCCGAGAA CGTTGAATCC ATGGAAGTAT TAAAGGATGC TTCTGCTACG GCCATTTATG GAGCCAGGGC CAATAATGGT GTAATTTTAA TTACAACCAA AACCGGTAAA GCAGGAGTTG CCCAACTTTC TTACAAATTT ACTGGTGGTT ACAACCAGAG GAGAGCAGGT TATCAATACA TGGGTGCAAA AGATTATATC TATTATACAC GTCTTGGATA TCTTAATGCT GGCAGAACTC TTGCCCAGGT AAATGGATCA AGAGGATTGG GTTTGTTAAC CGGTGCGGCA GACCTGGCCA GTTTTGATAT CCGGTCTTAT GTAGCTGGAA CTACTCAGCT GCCTGCCGGC TGGGATATTG TAGATGACCC TTACGGGGGA CAGATCATGT TTAAAGACCA CGGAGGCGAA GTAGAGAATG TGGTGTTCAG AAATACGTAT ACCAAAGACC ACTATGTGAA TGCAAGTGGA GGAAATGAAA AGGGAAAATA TTTTGCTGCC TTCGATGCAT ATAACGAAGA CGGGGTAATT GTAGGTTCAA AGTACAAACG TTATACCGGC GACATTAATG GTTCTTATAA GGTAAAACCA AGTGTTGAAG TAGCAGGCGG GGTTACGCTT TCAACTTCTT CACAGATTGG GGTAATCGGA TCGGAGGTAA ATTCCATATA TAGGAGTCTG GCCATCTGGC CTACATTCAA TCCTTGGCTT GATGAAGGAA AAACGCAACC CAATCCGGGA AATGGAGTAA ATGATGGAAA CCCTTTATAC TGGTTGGGCA GATTAAACAG GACAAACGAA GTGAACAAAG TAGTGGTAAA CGGCTCTGTA AAATGGGACC TGTTACCAGG ATTGTATTTT AAAGGTACGG GAAATGCTTA TCTATTTGAC CGTCTGGACC AATCGTTCCA GAAATCAACG CAATTGTATA CCAATATTTT TGCAAATCCC CAGACCATCA GCAGCAGTAC CAGGGATGCC ATCAATCTCA GGAGAAGGGA ATTTCAAACC CAGTTTAACG GTATCTTGAA TTACAGCAAA GAATTCGGGA AACACAATCT GACTGCTATG GCAGGTGCTG AAACATTCAT CAACAAAATG TTAAACGCGC AGTTATACGG ACAAAACGCA CCAACAGATG AAATAACGAC CATTAATGCC TCTACCGTTT TTCCTGTAAC TGTTGCAGGT GCAAGGGCTA ACTATAGTGA CAGGTCTGAG TTCCGCATCA ATTCTGTCAT CAGCCGGTTG GCCTATGACT ATGACCAGCG GTACTTATTT ACCGCGGTTT TCAGGGCTGA TGGTGTTTCC AGTTTGCCGC AGGGAAACCA ATGGGGATAT TTTCCAGGTG TTTCTGCTGG CTGGAATGTG CACAAGGAAG CGTTCTTTCA GCATTCGGGC ATAAAGAATT ACATCTCTAC TTTAAAGCCG AGGATCAGCT ACGGAGTGAA CGGAAATATT GCCGGTTTGG GTAGGTATGA TGTTCAGGGT GTATATAGTT CACCGGCAAA TTACGATGGA GTAGGAGGAT TTAACCATGC GAATCTTCCT AATGCAGATT TACGATGGGA AAAAAGTGCA ACTATTGACC TGGGGCTGGA CATGGGTTTG TTAAATGACC GGATAACACT ATTGTTTGAT TATTACAACC GTAAAACTTC CGACCTGTTG ACAAATCTTG ATTTGCCGGC TTATATCGGG TATCCGCCAC TAAAAACAAA TCTGGGTACC TTACAAAACA AGGGGTATGA AATGGCCGTA AATGCTAAGG TGCTGAATAC GTCCGGAGGC TTTACCCTTA ATCTTGGTGC AAATGCCAGC TTTGTAAAAA GCAAAGTACT TAAATTACCT TTTAACGGTA ATGAAAATAA CAGACAAGGC GGTCTTCAGG TATTTGATCC GGCCACAGGC CAGGTCATCT GGGTTGGAGG TATACAGGAA GGTAAACCTC TGGGCGATAT TTATGGATTC AAACAAGTGT CCATTTTCAG AGATGCAGAT GAGGTTTCGA GAATTGCAGG CAACAGGACA GATTTAATAG CTGGAATTAC AGGTCCTAAT TTACCAGCCG GAACGAACGG ACGTATTACG CCTGGAGATG TGAACTGGGA AGATGTAAAT GGAGATAACA TCATTGATTC CAGAGATCAG GTTTATCTGG GTAATATGGT GCCTAAATGG ACAGGAGGTT TCAATGCAAA TGCAGCCTAT AAAGGGATTT CATTATATAC CCGATTTGAA TTTGCGACCG GTCATACCAT TTACAACGAT CTGGTAGCAA GGACGCTAGG TAACTATCAG GGTACCTTCA ATTATATTGA GCTGATGAAG CAATCGTGGT CACCTCAAAA TCCGGATGCT GATATTCCAA AAGTGTATTT CGCCGACCAG GTTGTGGGAT CAAAACAAAA CTACACCAGG GCAAACAATG CTGCGGCAGT AGTTAACGGT AACAACTCCA GGCTTTATGA AAAGGGAAAT TACCTGGCCC TGAGGGAAGT TACACTTTCT TATACATTGC CTAAAACACT CATTGCAAAA AGTAAATTCC TTGCCAGCAC AAGGGTTTAT GCCACCGGAA GCAATTTGTT TTACCTTAGC AAATTTAGCG GTCCTGCACC AGAGGCACCT ACCGACGCGA ACAACAACAT CACCGGAATA TATCTGGGTG CATATCCAAC TCCCAGAACA TTTGTATTCG GTCTGGAAGT TTCATTTTAA
|
Protein sequence | MKQFYLKTIV LMLFLLSTGA YAQNKRVTGT VSGEDDGLSI PAVSVVVKGT KAGTQTDMNG KFSIDANAND ILVFTYVGYL TQEIKVGNNI SLKVVLKSTS ANLDEVVVVG YGTQNRRNVT SSISKLDKEV LANAPRANLG TALQGSIPGV QVATRSGQPG AGPAITLRGG ASINSPGGPL VIVDGVIRDY NDISSENVES MEVLKDASAT AIYGARANNG VILITTKTGK AGVAQLSYKF TGGYNQRRAG YQYMGAKDYI YYTRLGYLNA GRTLAQVNGS RGLGLLTGAA DLASFDIRSY VAGTTQLPAG WDIVDDPYGG QIMFKDHGGE VENVVFRNTY TKDHYVNASG GNEKGKYFAA FDAYNEDGVI VGSKYKRYTG DINGSYKVKP SVEVAGGVTL STSSQIGVIG SEVNSIYRSL AIWPTFNPWL DEGKTQPNPG NGVNDGNPLY WLGRLNRTNE VNKVVVNGSV KWDLLPGLYF KGTGNAYLFD RLDQSFQKST QLYTNIFANP QTISSSTRDA INLRRREFQT QFNGILNYSK EFGKHNLTAM AGAETFINKM LNAQLYGQNA PTDEITTINA STVFPVTVAG ARANYSDRSE FRINSVISRL AYDYDQRYLF TAVFRADGVS SLPQGNQWGY FPGVSAGWNV HKEAFFQHSG IKNYISTLKP RISYGVNGNI AGLGRYDVQG VYSSPANYDG VGGFNHANLP NADLRWEKSA TIDLGLDMGL LNDRITLLFD YYNRKTSDLL TNLDLPAYIG YPPLKTNLGT LQNKGYEMAV NAKVLNTSGG FTLNLGANAS FVKSKVLKLP FNGNENNRQG GLQVFDPATG QVIWVGGIQE GKPLGDIYGF KQVSIFRDAD EVSRIAGNRT DLIAGITGPN LPAGTNGRIT PGDVNWEDVN GDNIIDSRDQ VYLGNMVPKW TGGFNANAAY KGISLYTRFE FATGHTIYND LVARTLGNYQ GTFNYIELMK QSWSPQNPDA DIPKVYFADQ VVGSKQNYTR ANNAAAVVNG NNSRLYEKGN YLALREVTLS YTLPKTLIAK SKFLASTRVY ATGSNLFYLS KFSGPAPEAP TDANNNITGI YLGAYPTPRT FVFGLEVSF
|
| |