Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3253 |
Symbol | |
ID | 8254372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3859580 |
End bp | 3861151 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644936906 |
Product | glycosyl hydrolase BNR repeat-containing protein |
Protein accession | YP_003093510 |
Protein GI | 255533138 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4409] Neuraminidase (sialidase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.962324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.018694 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAACA GAAAAATATT TAACCATTTT ATCCTGTTCA TCTTTATAGC AGCTGCATTA GCTTGTTCAG ATAAAATTTA CAAAGCCCGG GATAGGGGCG GCATAAGCAT TAAAGCCGAA CCAACCATTA ATCCTATCTT TAAAAGACTG GAAGTCAATC CGTATCTGCG TCTGGAAATT GACATCCCAG AAGGTACTGA GGCGATAACA TTCCAGCAAT TTAAAGGCAG TATAGAAACA GCAGGATTAC AAGATATCGC AAAGCTGGAG CTTTACCAGG GAGATGATCA GCAGGAACTT TCAAAAAATA AATTGCTGGG GAGTACAATA CCCTCAACAA ATCAGTTTAG CATTACGCTT GGCACGACTT TAACACCAGG AAAACACAGC TTATGGCTAA GTGTAACCTT AAAAGACAAT GCTGATATTG ATCATCAGCT GCGGATCAGA GCTGATCAAT TGACCAACGC ATCAGGCCTG ATCTATAAAG TGGCACAACA CCAGATCAGT TCAAGATACC TGGGCATCGC CCTGCGCAAA CCCAATGACG AAAATGTACA CACTTACCGC ATCCCCGGTA TGATCACCAC AGACAAAGGA ACTTTAATTT CCGTTTACGA TATCCGTTAT GACAATGACA AAGACCTGCC GGGCAATATT GACGTAGGAA TGAGTAGAAG TACCGACGGA GGTAAAACCT GGGATACCAT GAAAAATATT ATGGATATGG GTGGACCGGC AGATAACAGT GGTTCCGGCG ATCCTTCAAT CTTATTTGAC CCTGTCACTA AAACCATATG GGTTTCAGCC CTATGGAGTA AAGGTAACCG CTCTATTGCA GGCTCAGGAC CCGGTTTAAG TCCTGAAGAA ACCGGGCAGT TCCTGGTTAC CAGCAGTAAG GATGACGGAT TAACCTGGAC CAAACCCTAC AGCATCACTA ACCAGGTTAA AAATCCGGAA TGGCGCTTGT TTTTCCCTGG TCCGGGTAAT GGAATTGCCA TGGCAGACGG GAAAATTGTT TTCCCGGCAC AATACTGGGA TGCCGCAAAA ATGCCGCATT CCACCTTAAT CTATAGCGAT GACCATGGTA AAAGCTGGAA AGCAGGGCTT GGTGCAAAGT CAAATACCAC AGAGGCCCAG CTTGTAGAAA CAAACCCGGG AACTTTAATG CTGAACATGC GGGACAACAG GGGTGGGTTC AGGAGCGTAG CTACCACAAA AGATATGGGA CAAAGCTGGA TCGAACATGC AACGTCCTAT AGTGCCTTAC CCGACCCGGT TTGTATGGCC AGTTTAATAA AAGTCAATGT AAAATTTAAG CGCGTATCAA AGGATGTCCT GTTTTTCAGC AATTTGAATA TTTCAACGCC TCCCAGGGCA CATACTACCA TTAAAGCTAG TCTGGATTTA GGAGAGTCCT GGCAACCTGT AAATCTATTG CACCTTGATG AACGTAAATC TTACGGCTAT TCCGTACTTA CTAAAATAGA TGACCAGACC CTGGGTTTGC TATATGAAGG CATCAGGACT TTGCTGTTTG TTAAAATTCC CGTAAAGGAT ATCATTAAAT AA
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Protein sequence | MNNRKIFNHF ILFIFIAAAL ACSDKIYKAR DRGGISIKAE PTINPIFKRL EVNPYLRLEI DIPEGTEAIT FQQFKGSIET AGLQDIAKLE LYQGDDQQEL SKNKLLGSTI PSTNQFSITL GTTLTPGKHS LWLSVTLKDN ADIDHQLRIR ADQLTNASGL IYKVAQHQIS SRYLGIALRK PNDENVHTYR IPGMITTDKG TLISVYDIRY DNDKDLPGNI DVGMSRSTDG GKTWDTMKNI MDMGGPADNS GSGDPSILFD PVTKTIWVSA LWSKGNRSIA GSGPGLSPEE TGQFLVTSSK DDGLTWTKPY SITNQVKNPE WRLFFPGPGN GIAMADGKIV FPAQYWDAAK MPHSTLIYSD DHGKSWKAGL GAKSNTTEAQ LVETNPGTLM LNMRDNRGGF RSVATTKDMG QSWIEHATSY SALPDPVCMA SLIKVNVKFK RVSKDVLFFS NLNISTPPRA HTTIKASLDL GESWQPVNLL HLDERKSYGY SVLTKIDDQT LGLLYEGIRT LLFVKIPVKD IIK
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