Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3249 |
Symbol | |
ID | 8254368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 3852808 |
End bp | 3854295 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644936902 |
Product | glycyl-tRNA synthetase |
Protein accession | YP_003093506 |
Protein GI | 255533134 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0423] Glycyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00389] glycyl-tRNA synthetase, dimeric type |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.281053 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00448945 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCAAAGA ATACTAACGA CGAGCAATTT AAAAATGTAA TATCACACGC TAAGGAATAT GGTTTTGTAT TTCAAAGCAG CGAAATATAT GACGGACTAA GTGCTGTATA CGATTATGGA CAGCTTGGTG CCGAATTAAA AAACAACCTG AAAACCTACT GGTGGAAAGC CATGGTGCAG CTGCACGAAA ATATTGTAGG CATCGACTCT GCCATATTTA TGCACCCTAA AGTATGGAAA GCCAGTGGCC ACGTAGATGG TTTTAACGAT CCGATGATCG ACAATAAAGA TTCTAAAAAA CGTTACCGTG CCGATCAGTT ACTAGAAGAT AAAATAGCCC GTTACGAAAA AGACGGCAAG ACAGATAAAG CTGCGAAACT GCAGGCTGAA ATGGACGATG CCTTGAAGGC GGAAGACTTG CAGCAACTTA AAACCCTGAT TGAACAGCAC GAGATTGCCT GTCCTGTTAG TGGTACAAAA AACTGGACAG AAGTGCGGCA GTTTAACCTG ATGTTCAGCA CCCAGTTTGG TGCCATGGCA GAGGGTTCTG AAGAAGTATA CCTGCGTCCG GAAACAGCAC AGGGTATTTT TGTGAACTTC CTGAATGTAC AAAAATCTGG ACGCATGAAA ATTCCTTTCG GAATTGCACA GATTGGAAAA GCTTTTAGAA ATGAAGTGAT TGCCAGACAG TTCATCATGC GTATGCGCGA GTTTGAACAG ATGGAGATGC AGTTCTTTGT GCGTCCGGGT GAAGACAAAA AATGGTTTGC CTATTGGAAA GAGGCCCGCC TGAAATGGCA CCTGGCATTG GGCACACCTG CCGAAAAATA CCGTTACCAC GACCATGTGA AACTGGCACA TTATGCCAAT GCCGCTACTG ATATTGAGTT TGAATTTCCT TTTGGCTTTA AGGAAGTAGA AGGCATCCAT AGCCGCACAG ATTTCGACCT TTCGCAGCAT CAGGAATATT CGGGCAAAAA AATGCAGTAC TTCGATAATG ACCTGGATGA GACTGGTAAG CCTTATGGTA ATTACGTGCC TTACGTAATA GAAACTTCTA TCGGCTTAGA CCGTATGTTC CTGCTGACCC TGATCAATGC TTTTGAAGAA CAGGACCTGA GTGAAGGTGA TAAACAAGAC AGCAGAACCC TGCTGCGTTT ACATCCCTGC CTGGCTCCTT ATAAAGTGGC AATTTTCCCG TTAACCAAGA AAGACGGGCT GCCTGAAAAA GCAAGGGCGA TCATGGATAA CCTAAAACTT GATTTCAATT GCATTTATGA AGAAAAAGAC GCTATTGGCA AACGTTATCG CCGTCAGGAT GCCATTGGCA CGCCTTTCTG TGTAACGGTA GACCATCAGA CACTGGAAGA CGATACGGTA ACCATCCGTC ACCGCGATAC CATGGAACAG CAGCGCATTG AAATTAAACA CCTGGATGAG CTGATTGCAA GTAAAACCAG CTGGAAGACC TTGTTTTGTA AAGATTAA
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Protein sequence | MAKNTNDEQF KNVISHAKEY GFVFQSSEIY DGLSAVYDYG QLGAELKNNL KTYWWKAMVQ LHENIVGIDS AIFMHPKVWK ASGHVDGFND PMIDNKDSKK RYRADQLLED KIARYEKDGK TDKAAKLQAE MDDALKAEDL QQLKTLIEQH EIACPVSGTK NWTEVRQFNL MFSTQFGAMA EGSEEVYLRP ETAQGIFVNF LNVQKSGRMK IPFGIAQIGK AFRNEVIARQ FIMRMREFEQ MEMQFFVRPG EDKKWFAYWK EARLKWHLAL GTPAEKYRYH DHVKLAHYAN AATDIEFEFP FGFKEVEGIH SRTDFDLSQH QEYSGKKMQY FDNDLDETGK PYGNYVPYVI ETSIGLDRMF LLTLINAFEE QDLSEGDKQD SRTLLRLHPC LAPYKVAIFP LTKKDGLPEK ARAIMDNLKL DFNCIYEEKD AIGKRYRRQD AIGTPFCVTV DHQTLEDDTV TIRHRDTMEQ QRIEIKHLDE LIASKTSWKT LFCKD
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