Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3248 |
Symbol | |
ID | 8254367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3851996 |
End bp | 3852703 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644936901 |
Product | ABC transporter related |
Protein accession | YP_003093505 |
Protein GI | 255533133 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.013922 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGTATTA AGGTAAGCGC ATTGGTCAAA TATTTCGGTA AACAAAAGGC GGTTAACGGA ATCAGCTTTG AAGCCAGACC CGGCAGAATA CTTGGCTTTT TAGGCCCTAA TGGTGCAGGT AAATCCACTA CAATGCGCAT GCTTACCGGT TATACAGCAC CCAGTTCCGG AACGGCCAGC TTATGTGGCT ATGATACACA GACCCAAAGT ATTGAACTGA GACGGATTAT GGGGTATTTA CCTGAAAACA CGCCTTTATA TATGGACATG TATGTAAAGG AGTTTCTTTT GTTTGTAGCC CATACCTATC AGCTAAAAAA TGCAGCACTA AAAGTAGAAG AGACGGTTCG ACGGGTAGGC CTTACTGCTG AGCAGCATAA AAAGATTGCC ATGTTGTCCA AAGGGTACAA ACAAAGGGTG GGCCTGGCAC AAGCCATCAT TCACGATCCC GAGGTGCTGA TCCTTGACGA ACCCACTTCC GGACTGGATC CGAATCAGCT CAGCGATATC CGTGAGCTGA TCAGGAACCT GGGTAAAGAT AAAACAGTGA TCCTTTCTAC GCACATTATG CAGGAAGTAG AGGCTGTTTG CGACGATGTG ATCATTATCC ATAAAGGTAC TATTGTGGCC AATGCTTCAA TAGTAGAATT AAAAAATAAG CACAATACCA CCTCCCTTGA AGAAATATTT AAAAAACTGA CTTCCTGA
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Protein sequence | MSIKVSALVK YFGKQKAVNG ISFEARPGRI LGFLGPNGAG KSTTMRMLTG YTAPSSGTAS LCGYDTQTQS IELRRIMGYL PENTPLYMDM YVKEFLLFVA HTYQLKNAAL KVEETVRRVG LTAEQHKKIA MLSKGYKQRV GLAQAIIHDP EVLILDEPTS GLDPNQLSDI RELIRNLGKD KTVILSTHIM QEVEAVCDDV IIIHKGTIVA NASIVELKNK HNTTSLEEIF KKLTS
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