Gene Phep_3248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3248 
Symbol 
ID8254367 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3851996 
End bp3852703 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content44% 
IMG OID644936901 
ProductABC transporter related 
Protein accessionYP_003093505 
Protein GI255533133 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.013922 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGTATTA AGGTAAGCGC ATTGGTCAAA TATTTCGGTA AACAAAAGGC GGTTAACGGA 
ATCAGCTTTG AAGCCAGACC CGGCAGAATA CTTGGCTTTT TAGGCCCTAA TGGTGCAGGT
AAATCCACTA CAATGCGCAT GCTTACCGGT TATACAGCAC CCAGTTCCGG AACGGCCAGC
TTATGTGGCT ATGATACACA GACCCAAAGT ATTGAACTGA GACGGATTAT GGGGTATTTA
CCTGAAAACA CGCCTTTATA TATGGACATG TATGTAAAGG AGTTTCTTTT GTTTGTAGCC
CATACCTATC AGCTAAAAAA TGCAGCACTA AAAGTAGAAG AGACGGTTCG ACGGGTAGGC
CTTACTGCTG AGCAGCATAA AAAGATTGCC ATGTTGTCCA AAGGGTACAA ACAAAGGGTG
GGCCTGGCAC AAGCCATCAT TCACGATCCC GAGGTGCTGA TCCTTGACGA ACCCACTTCC
GGACTGGATC CGAATCAGCT CAGCGATATC CGTGAGCTGA TCAGGAACCT GGGTAAAGAT
AAAACAGTGA TCCTTTCTAC GCACATTATG CAGGAAGTAG AGGCTGTTTG CGACGATGTG
ATCATTATCC ATAAAGGTAC TATTGTGGCC AATGCTTCAA TAGTAGAATT AAAAAATAAG
CACAATACCA CCTCCCTTGA AGAAATATTT AAAAAACTGA CTTCCTGA
 
Protein sequence
MSIKVSALVK YFGKQKAVNG ISFEARPGRI LGFLGPNGAG KSTTMRMLTG YTAPSSGTAS 
LCGYDTQTQS IELRRIMGYL PENTPLYMDM YVKEFLLFVA HTYQLKNAAL KVEETVRRVG
LTAEQHKKIA MLSKGYKQRV GLAQAIIHDP EVLILDEPTS GLDPNQLSDI RELIRNLGKD
KTVILSTHIM QEVEAVCDDV IIIHKGTIVA NASIVELKNK HNTTSLEEIF KKLTS