| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3172 |
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| Symbol | |
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| ID | 8254291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3774855 |
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| End bp | 3778271 |
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| Gene Length | 3417 bp |
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| Protein Length | 1138 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644936825 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003093429 |
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| Protein GI | 255533057 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.455515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATGAAA ATTTTAGGGT AAGCGCCCCA GCTTTCTGGC AGCGCTATTT AAAACAGCTT
ATGATGTTAA AGCTAATGTT ATTAATGAGT TTGGTATTTG CTTTTTCTGC AAATGCCAAT
CACGCATTGG CCCAAAGGGC CAGTCTCAAT GTAACGCAAA AATCGCTTAA AGAAGTGTTT
AGGCTACTCA AAGAGCAAAC AGATGTCGAT TTTCTTTTTA CAGAAAGCCA GCTAAAAAAT
GCCCATCCTG TTAGTATTAG CGTAAAGCAA AAAGGACTGA AAGAAATTTT GGCACTCTGT
TTTGAAGGGC AGGGCCTGAG CTATGTACTA AATGGCAATA CGGTGATCGT AAAAAAAGAG
AACAACAGTC CTGTCCTGGT CAATATCCAG CAGCGTACCA TTACCGGTAT CGTAACAGAT
GAAAAGGGAA CTTCCATACC TGGTGTAAAT ATCGAAGTAA AAGGTACCGG CAAACGGGCA
GTAACCAACA GCGACGGGAA GTATTCCATC AGCATTGATA AAGACAATGC GGTGCTTGTT
TTTAGCTATA TGGGCATGGC TACCCAGGAA GTAGCTGTTG CCAGCCGCAA TGTTGTTAAT
GTGGAGCTTA AAGCAGAATC TGCTGATTTG AGCGAGGTGG TGGTGGTAGG TTACGGCACG
CAGAAAAAAG TAAACCTGAC CGGTGCAGTA GCTTCCATTG ACATTGCTAA AGTTGCCGAT
TCCAGGCCAA TTACCAATGT TTCTTCTTTA CTTACCGGAC TTGCACCAGG CTTGTACGTG
AAATCAGGAA ATGCAGATCC GGGTGGCAAT GCCTCACTAC TCATCAGAGG CCAGGGAACA
CTGAACAATT CTGCCCCTTT GGTGATCATT GATGGAGTGG AAGGCGACAT TTCGAGAGTC
TCACCTCAGG ACATTTCTTC TGTTTCGGTA TTGAAAGATG CTTCTTCAGC TGCAATTTAT
GGCTCCCGGG CAGCTAATGG TGTATTGTTG ATTACCACCA AGCAAGGTGT AAAAGGTAAA
TTTTCCATCA GTTATGATGG TTATGCCACC ATGCAGTCAG TAGGACACCT GATGCCATTG
GTAGACAACA GTGTACGGTA TATGGAACTG CTGAATGAAG CTGCAAAAAA TTCGGCTGTA
GCACCGGTAT TTACCGAAGC AAACATCCAG AAATGGCGTG ACAATGCAGG TGGCGATCCA
CTGCTTTGGC CAAATACCAA TTGGGCAGAT GGCCTGTTCA GAGACGTAAC AGCCGTAAAC
CATAATGTTT CGGTATCGGG TGGTACAGAT AAGCTCACTT CATTTATGTC ATTCAATTAT
GCCAATAATC CTGGAATGAT AGAAAATACC GGCTTTCAGC GGTACAGCCT CCGGTCTAAT
ACCCAGCTAC AGGCTACAAG CTGGTTAAAA GTAGGTATGA ATTTAAACGG AACTTATTCT
ACAAAGGATA GGGGAAGTCA GCAATTGGAA GGTATGTTCA TCAACTCCAT TCTTGCCGTA
CCAACCGTAG TTCCAAGACA TCCGGATGGC AGATATGGCG GAACCAATAA TTCGGAAGAA
AACTCTGTCG CGCTGTCGCC TATTTTTTAT GTGAACCAGG TTAAAGGGAC TAATAAAACG
AATACCCTGG TCAGCCGGTT TTATGTAAAC GTAAATCCTA TGGAGGGGCT TAACGTCAAT
GCCTCTTATA ACTATAACTT GTTTGACAAT AAAATTACTA CAATTCCCAC GCAAAACGAC
CGCTGGAATT TCCAGACCAA TACCATTCTG GTACCTGGTG CGGTAGCTTT ATATGTTCAG
AAACAGGACA TCAATAATGT CAGGAACTTT ATGGATTTTG ATGCATCCTA TGAAAAAACG
TTGGATAAGC TGAACATGAA ATTAATGGTT GGCGGAAGTC AGGAAAGGTA TCTTGCTGAA
AACCTGGCGG TAACCAAACA AGGGCTTATC GATGAGAACC TTACGCAACT TAACGGGGCT
ACCGGCGTGG CTACAGCAAC AGGTACATTG GATGGAGACT GGGCCATGCA TTCCTATTTT
GCAAGGTTGA ATATGGCCTG GGATTCCAAA TACCTATTGG AACTGAACAT CAGAAGAGAT
GGATCTTCCA GGTTTACGCA GGCCAACCGC TGGGGAAATT TTCCTTCAGC TTCTGTAGGA
TGGAGAATTT CCGAAGAGGA ATTTATGAAA TCGCTGAAAT CAACCTGGTT AAATGATTTA
AAATTCAGGG CCTCATATGG TGCTTTAGGT AACAATGCAG TGGGCGATTA CGAGTCTATT
TCTGTGTTGT CGTCTGTCCT GTATTCTTTT AACAATGCGC CGGTAAATGG TTTTTATCAA
ACCAGGTTCC CTAACCTCGG TTTATCCTGG GAATCTACCT ATGTAACCAA TTTGGGACTT
GATTTTAGTC TTTTTAGCAA CCGTTTGTCG GGTAATCTGG ATGCCTACAA TAAACTCACC
AAAAACATAT TGATCAGCTT GCCTGCCCCA TTGGTTAATG GTACCATTTC TATACCGCCG
CAAAACAGTG CCGAAGTACA AAACAGGGGA ATAGAGCTGG GCTTAAACTG GAAAGATAAA
ATTGGCGAAG TAGGTTATTT TGTAGGTACT AATTTCACCT TTAATGCAAA TAAGGTACTC
AAATTTAAAG GAAGTGAATA TTCGCTTTCG GGAACTTCAA TGATTAAGGA AGGATTACCT
ATCAATACCC AATACGTTTT ACTGGTAGAT AGAATCATAC AGACGCCAGA GGATGTACAA
TGGGTAGCAG ACAGAATTGC CAATGCCCCC TTTGATCCGA ATGATCCTGA AACAGATCCA
ACCAAGAAGA GAAGGCTCAA TGCTTTTCCG TATGGAAAAC CCGAACTTGG AGATTTCCTG
TTTAAAGATG TAAACGGCGA TGGAATTGTA GATGATAACG ACAGGGCCAA TGTAGGAAAA
GGGTCTAATC CGCAGTTTTT CTATAGCTTC ACTTTAGGGG CCAATTATAA AGGCTTCGAT
TTTTCAGCAA TGATTGATGG AGTAGGCGGA ATAAAAACCT ATTTTCAAAA TGATTATTAC
AACCCCGTGC TGAGGTGGTC CCGCATCATA AATCAGGAAA TAGCAGATGG AAGATGGTAT
CCTGGGCGCA CTACAACGGC TACCTATCCA AGGTTGCTGC TAAACGACAA CAGAAATACC
CGCTCCAGCG ACTTTTGGGT ACAGGATATG TCTTTCCTGA AGATCAGGAA TATTCAATTG
GGCTATTCAT TACAATCTAA TGTATTGTCA AAACTCAAAG CTTCAAAGAT CCGTTTTTAT
GCCACACTTG AAAATTATTT CACCTTTACC AAGTATAAAG GTTTAGATCC GGAAGTTTCC
GGCATGGCTT ATCCGAACGT AAAACAAGCT GTTTTTGGAA TGAATTTAAC TTTTTAA
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| Protein sequence | MYENFRVSAP AFWQRYLKQL MMLKLMLLMS LVFAFSANAN HALAQRASLN VTQKSLKEVF
RLLKEQTDVD FLFTESQLKN AHPVSISVKQ KGLKEILALC FEGQGLSYVL NGNTVIVKKE
NNSPVLVNIQ QRTITGIVTD EKGTSIPGVN IEVKGTGKRA VTNSDGKYSI SIDKDNAVLV
FSYMGMATQE VAVASRNVVN VELKAESADL SEVVVVGYGT QKKVNLTGAV ASIDIAKVAD
SRPITNVSSL LTGLAPGLYV KSGNADPGGN ASLLIRGQGT LNNSAPLVII DGVEGDISRV
SPQDISSVSV LKDASSAAIY GSRAANGVLL ITTKQGVKGK FSISYDGYAT MQSVGHLMPL
VDNSVRYMEL LNEAAKNSAV APVFTEANIQ KWRDNAGGDP LLWPNTNWAD GLFRDVTAVN
HNVSVSGGTD KLTSFMSFNY ANNPGMIENT GFQRYSLRSN TQLQATSWLK VGMNLNGTYS
TKDRGSQQLE GMFINSILAV PTVVPRHPDG RYGGTNNSEE NSVALSPIFY VNQVKGTNKT
NTLVSRFYVN VNPMEGLNVN ASYNYNLFDN KITTIPTQND RWNFQTNTIL VPGAVALYVQ
KQDINNVRNF MDFDASYEKT LDKLNMKLMV GGSQERYLAE NLAVTKQGLI DENLTQLNGA
TGVATATGTL DGDWAMHSYF ARLNMAWDSK YLLELNIRRD GSSRFTQANR WGNFPSASVG
WRISEEEFMK SLKSTWLNDL KFRASYGALG NNAVGDYESI SVLSSVLYSF NNAPVNGFYQ
TRFPNLGLSW ESTYVTNLGL DFSLFSNRLS GNLDAYNKLT KNILISLPAP LVNGTISIPP
QNSAEVQNRG IELGLNWKDK IGEVGYFVGT NFTFNANKVL KFKGSEYSLS GTSMIKEGLP
INTQYVLLVD RIIQTPEDVQ WVADRIANAP FDPNDPETDP TKKRRLNAFP YGKPELGDFL
FKDVNGDGIV DDNDRANVGK GSNPQFFYSF TLGANYKGFD FSAMIDGVGG IKTYFQNDYY
NPVLRWSRII NQEIADGRWY PGRTTTATYP RLLLNDNRNT RSSDFWVQDM SFLKIRNIQL
GYSLQSNVLS KLKASKIRFY ATLENYFTFT KYKGLDPEVS GMAYPNVKQA VFGMNLTF
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