| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3127 |
|---|
| Symbol | |
|---|
| ID | 8254245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3734927 |
|---|
| End bp | 3736177 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644936780 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003093385 |
|---|
| Protein GI | 255533013 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCTA GAAAAACCAT TTTAATTATC GCATCAGTTA TCGTTGTACT CGGACTGATA
TGGTATTTCT TTTTAAGGAC AAAAGAACAA CCGGTTGTAC TTAGTCAGGA AAAGCCGACT
ATAGGGCCAA TTTCTTCGAG TGTAACGGCT ACCGGAACCG TGCAGCCCGT GGACACGGTT
ATTGTAGGTA CCCAGGTTTC CGGAACCATT TCGGCACTGT ATGCCGACTT CAATTCTACA
GTTAAAAAAG GACAGTTGCT GGCCCAGCTT GACAAAACAT TGATCCAGAC AACGGTTGAC
CAGGCCAGGG CCAGTGTGGC ACAGGCACAA AGTAACCAGG CTTACCAGCA GGCAAATTTT
AACAGGCAAA AACAACTGTT TGAAACGGGT TCGATCAGCC GGGCAGACTA CGACCAGGCA
TTAAATAACC TTCAGGTAGC TACTGCAAGC GTAAACAATG CCAGGGCCCA GTTAAGATCT
GCCGAAAGGA ACCTTTCTTT TACACAAATC TACTCGCCTA TAGATGGCGT GGTACTGGGC
AGGAGTGTAA GTATTGGTCA AACTGTGGCA GCAAGTTTTA ATACGCCAAC CATTTTCTCC
ATTGCTAAAG ACATCACTAA AATGCAGGTA CAGGCAAAAG TAGATGAGGC CGATATAGGG
AACGTAGCCA AAGGACAACG TGCTACCTTT ACCGTTGATG CTTTTATTGA TGATACCTTT
AACGGGACAG TGAAAGACAT CCGTTTACAA CCTTCTATAT CCTCAAACGT AGTGACCTAT
GCTACCTTAA TTGATGCACC AAATGACAAC AAGAAATTAA AACCAGGGAT GACGGCAAAC
ATCATCATTT ATACAAAAGA AGTGAATGAT GCCTTACTGA TCTCGGCCCA GGCCCTAAAG
TTCAGGCCGG ATTCGGCTTC ATTGAAAAAT TATGAGATTA TTCCGCTCCC CCACAAAAAA
AGAGGCGATA AAACGGGAAG CAACAAGCCC AGGAGAGATA AAACGGCAGG AAAAGCAAAT
GGAGAAACAG TCATGACCGA ACCTTCATAT GTATGGGTAT TGGATGGACA GAAGCTTATC
CAGAAAAAGA TAAAAACAGG TTTAAACGAC AATACCCATG TAGAAGTACT GGAGGGGCTT
ACACAAAATG ATATTGTAAT TAACGGAATG GAGGGGGGTG TAACCGCAGC GCCGGCCGCA
GCAGCCACCA GTCCTTTTAT GCCGCAAAGA AGAGGAGGAA GCAGACGATG A
|
|---|
| Protein sequence | MKSRKTILII ASVIVVLGLI WYFFLRTKEQ PVVLSQEKPT IGPISSSVTA TGTVQPVDTV
IVGTQVSGTI SALYADFNST VKKGQLLAQL DKTLIQTTVD QARASVAQAQ SNQAYQQANF
NRQKQLFETG SISRADYDQA LNNLQVATAS VNNARAQLRS AERNLSFTQI YSPIDGVVLG
RSVSIGQTVA ASFNTPTIFS IAKDITKMQV QAKVDEADIG NVAKGQRATF TVDAFIDDTF
NGTVKDIRLQ PSISSNVVTY ATLIDAPNDN KKLKPGMTAN IIIYTKEVND ALLISAQALK
FRPDSASLKN YEIIPLPHKK RGDKTGSNKP RRDKTAGKAN GETVMTEPSY VWVLDGQKLI
QKKIKTGLND NTHVEVLEGL TQNDIVINGM EGGVTAAPAA AATSPFMPQR RGGSRR
|
|---|
| |