| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3108 |
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| Symbol | |
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| ID | 8254226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3712125 |
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| End bp | 3713849 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644936762 |
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| Product | glycosyl hydrolase family 88 |
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| Protein accession | YP_003093367 |
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| Protein GI | 255532995 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.285148 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.618959 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTAT TTAGCAGGTT ATTTTTTGTC ATAGCAGGTA CTTTAATTTT AACGGGCGCC
TCTTTAGCTG TATCCGCCCA GTCCAATGAT GCACTGTCTG TAGCTAAAAA AGTAGCAGAT
AAGGTTATTG CTGATACACG TTTTGCTTTT ACACTGGTTC CCCAGAAAGA TGTACTGGGC
CTGCAGGTGA TTGATTTCAG AAATTTACAG CCTGCATCAG CACAACAGGT ATATGCGAAA
AGCCAGCTTA CAGCCATCAG CGATACCACT GTAAGTTTTG GCTTAAGTTA TGCCGGCAAG
CTCAGCATCT GGTTAAACAG AAAACAGGTA TACCATGAAG AGAACCCGGT TATTCAAATC
CCCAAGGAGA TTTCTTATAA TCGTTTTACC TTCAATAAAA GTTTTTCTGC ACGCTTAAAA
AAGGGTGATA ACGAAGTAGT GATCTGTTAT ACACCCGGGG CAAATGCATT GCCTGTCGTA
TTTCTGATGC CGGCTACAAA AGAGGGCGAC CTGGATGCTG CTGCAAAATT CAGCTCAGGA
ATTAAAGAGG ACAATCAAAA TACAGCCTGG ATGCTTTTAG GTCCAGTTAG CAATACCCGG
CTGCCCGAAA AGGGCATGCC GGATTATACA ATGGAAAAGG GGAGGGTGCT GACCTGGGCT
AAAAGTTCGC AGCGCTTTAT TCCTGAACTG GAAACGCCGG CCACGGCGGC CTACCAGCGC
GACCCTTATA CCGACTGGCA TTATTCGCAT GGTACAATGG TATGGAGTAT CATGGCGCTT
GACAACAATG GTAAATACAG TGCCTTTGCC AGGCAGTATA TTAATTTTAC CCTACGGCAA
CTGCCTTATT CCGATTATCA GTACAACAAT CTGTTTGCCT GGCGCGGCAG TTACCACCGC
ATATTCAGGC GCACCATGCT GGACGATACC GGGGCACCCG TTTTGCCGTT TGCAGAACAA
TATTTAAGGG AAAAGGATGA CAAGGTAAGA GAATTGGTAA TGCCCATAGG AGCTTATGTA
GCTAAAGAAC AGCTCAGGTT AAAGGATGGT ACTTTTTGTC GCCCTGAACC TGTTGAATCA
ACAGTCTGGG CCGACGATTT GTTTATGAGC GTACCTTTCC TGCTGCAGAT GGCAAAGATT
ACAGCTGATG CTAAATACTA CGACGATGCT GCCAAACAGG TATTGAACTT CAGGAAATAC
CTGCTCGACC CTGCAACGGG TCTGTATAAA CATGCCTGGT TTAACCATAG CCAGCAACGC
TCGGCCGCTT ACTGGGGACG GGCCAATGGC TGGGTGGTAT GGGCAACAGC TGAACTGCTT
GAAAAATTAC CCAAAAACCA TCCTGCTTAT CAACAGGTAC TTCAGAATTT CAGACAGCAG
ATGAAAGTGC TGATAAGTTA CCAGAATAAA AACGGTTTCT GGCACCAGGT ACTTGACAGG
GCCGATTCGT ATGAGGAAAC CTCCTGTACG GCCTTATTTA CCCTGGCATT GGCCAGGGGG
GTAAGACAAG GCTGGTTAAG CCCTGCCTAT AAAAAGAATG CGATTGCAGG TTGGCAAGCC
GTTAAAACCA AGATTGATGA AAACGGTGTG GTGCAGGGCA TTTGCCAGGG AACCGACATT
GGTTACGATC AGGAGTTTTA TATGAAAAGA AAAACGATAG ACAATGATCC GCGCGGTATG
GGTGCTGTCA TCACTGCGGG AATAGAAATT TCAAAGCTGC AATGA
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| Protein sequence | MNLFSRLFFV IAGTLILTGA SLAVSAQSND ALSVAKKVAD KVIADTRFAF TLVPQKDVLG
LQVIDFRNLQ PASAQQVYAK SQLTAISDTT VSFGLSYAGK LSIWLNRKQV YHEENPVIQI
PKEISYNRFT FNKSFSARLK KGDNEVVICY TPGANALPVV FLMPATKEGD LDAAAKFSSG
IKEDNQNTAW MLLGPVSNTR LPEKGMPDYT MEKGRVLTWA KSSQRFIPEL ETPATAAYQR
DPYTDWHYSH GTMVWSIMAL DNNGKYSAFA RQYINFTLRQ LPYSDYQYNN LFAWRGSYHR
IFRRTMLDDT GAPVLPFAEQ YLREKDDKVR ELVMPIGAYV AKEQLRLKDG TFCRPEPVES
TVWADDLFMS VPFLLQMAKI TADAKYYDDA AKQVLNFRKY LLDPATGLYK HAWFNHSQQR
SAAYWGRANG WVVWATAELL EKLPKNHPAY QQVLQNFRQQ MKVLISYQNK NGFWHQVLDR
ADSYEETSCT ALFTLALARG VRQGWLSPAY KKNAIAGWQA VKTKIDENGV VQGICQGTDI
GYDQEFYMKR KTIDNDPRGM GAVITAGIEI SKLQ
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