| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3098 |
|---|
| Symbol | |
|---|
| ID | 8254216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3700953 |
|---|
| End bp | 3701552 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644936752 |
|---|
| Product | RNA polymerase sigma-70 factor |
|---|
| Protein accession | YP_003093357 |
|---|
| Protein GI | 255532985 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.29649 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTTTA AAGAAATCCA CGAAGGAATG GAAACAGCCT TTAACGAACT TTTTTTAGCT
TATTATGATC GGCTGGTTGC TTTTTCTGTT CAATACGTAA AGCAGCAGGA ATGTGCGGAA
GAAATCACTT CAGAACTATT TGTGAAGCTC TGGCTCAGAC GAAACGCCCT GTACGATATT
TTAAACCCGG AAGTTTACCT GTATGTCGCT GTCAAAAATG CTTCACTAAA CTACCTTCGT
GGAGATAAAA AGAATAATAG GGCTTTGTTT GACGGGATAG AAAAAGCGGA TATATTGCCG
TTTGGTGATT ACCATAGTCC GGAACTGGAA ACAAAAGAGC TGACCCGAAA ACTGGATGAG
GCCATCGCTG CTTTACCTGA GCAGCGCAGG ATGATTTTCC GGCTGATCAA AGAAGATGGA
CTGAAGTGCA GGGAGGTGGC CCGGATATTA AATATTTCTG TACGGACGGT TGAAAACCAA
ATGTACAAGG CCGTAAAAAA CCTGGCAGAT GCGATAAGCC CTTACCTGGG CTATCATCCT
CAAAAAAAGA TCAGCAAAAA ACAAGCATTC TCCAACCTGC CACTTTTATT TTTTTTATAA
|
|---|
| Protein sequence | MLFKEIHEGM ETAFNELFLA YYDRLVAFSV QYVKQQECAE EITSELFVKL WLRRNALYDI
LNPEVYLYVA VKNASLNYLR GDKKNNRALF DGIEKADILP FGDYHSPELE TKELTRKLDE
AIAALPEQRR MIFRLIKEDG LKCREVARIL NISVRTVENQ MYKAVKNLAD AISPYLGYHP
QKKISKKQAF SNLPLLFFL
|
|---|
| |