| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3034 |
|---|
| Symbol | |
|---|
| ID | 8254146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3627102 |
|---|
| End bp | 3627569 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644936683 |
|---|
| Product | transcriptional regulator, Rrf2 family |
|---|
| Protein accession | YP_003093294 |
|---|
| Protein GI | 255532922 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0110588 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA CTGCACAGGA AGAATATGGA TTAAGAATTT TGCTCCGTAT TGGAAGACAT
GACCATGGGG ATGGAATCAG CATTCCGGCT ATTAGTGAAG CCGAAGGCTT ATCTGGGGCT
TATGTAGCCA AACTAACCCG TATTTTGCGC ATGGCGGGCT ATATCAATAG CACACCTGGC
AATAAAGGCG GGTATGTACT GGCACAGACC GCTGGACAGA TCAATATTAA TCAGGTAATG
AAAGTATTGG GTGGCGCACT TTACAGTAAA AAGTTTTGTG AAGATTATCC CGGTACTTTA
AAATTATGCA CAAACTCTAT AGATTGTTCT ATAAGGTCTT TATGGCAAAT GATCCAGTTT
ACTGTTGATC AGCTGCTGGA TAAAGTTACA TTACAGGACC TGATCAGTCA GGAGCAGGAA
TCAAGTTTAT TACTTGAATC AATTTTACAG CAGCACGTCA CTTCGTAA
|
|---|
| Protein sequence | MKITAQEEYG LRILLRIGRH DHGDGISIPA ISEAEGLSGA YVAKLTRILR MAGYINSTPG
NKGGYVLAQT AGQININQVM KVLGGALYSK KFCEDYPGTL KLCTNSIDCS IRSLWQMIQF
TVDQLLDKVT LQDLISQEQE SSLLLESILQ QHVTS
|
|---|
| |