| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3032 |
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| Symbol | |
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| ID | 8254144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3623625 |
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| End bp | 3626078 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644936681 |
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| Product | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase |
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| Protein accession | YP_003093292 |
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| Protein GI | 255532920 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0787] Alanine racemase |
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| TIGRFAM ID | [TIGR00492] alanine racemase
[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.429122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0119577 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTC TCATTTACAA CATCAAACAT ATTGCAGGTA TTCTGGGTAT AAAAAACTTT
GAAGTACAAA AGGATGCGAT CATCAGTAAA CTTGTGATTG ACAGCAGAAG TGTAATAGAT
CCGGATGGCT CTTTATTTTT TGCTTTAAAG GGACAAAGAG ATGGACATGG ATTTTTAAAA
GATGCTTATG CCAATGGAAT CCGGAACTTT GTGATCAGTG AGGCTAAGTA TACCAGATTG
TTTCCTGACG CCAATATTTT GCTTGTTCAG GATGTGTTAC TCGCTTTACA TACCATCGCT
AAATATAATC GTAACCAGTA TGATTTAAAA GTACTTGGTA TAACCGGAAG CAATGGTAAG
ACCATTGTAA AGGAATGGCT GTATCAATTA CTGGCTGCTG ATCATAACAT TGTACGCAGT
CCCAAAAGTT TTAACTCCCA GATAGGTGTA CCTCTATCTG TATGGGAAAT TACGGCCATA
CATACACTGG GTATTTTTGA AGCAGGCATT TCCAAAACTG ATGAGATGGA TGCCTTGGCC
AGCATGATCA AACCTAATGT AGGGATTCTG ACAAATGTAG GAGAGGCACA TGCCGAGGGC
TTCGTTTCAT TAAAAGAAAA ACTGCTCGAA AAATTAAAGC TGTTTAATGA TGCTGACTTG
TTTATTTATG CTCCTGAATA TACAGCAGGA TTAAGTACAG ATGATTTACC AGGAAAAACC
AAGTTCTCCT GGAGCAAAAA ACAGCAAGCC GATCTGCAAA TCTTATTTGT TGAACCAATT
GATGGTAAAA ACTATATCCG GGCAGATTTT AAAGGAATAG AAATAGAATG CCTGATCCCA
TTTAGTGACC AGGCATCTGT AGAAAATGGG ATCATCTGCT GGGCTACCCT GCTGGCCTTG
GGGTATACAC CTGAAGAAGC GGATAAACGT CTGGAAAAGT TGACCAGGGT AAGTATGCGC
CTTGAATTAA AAAACGGGAT AAACCAATGT TCTGTAATAG ATGATTCTTA TAGCGCCGAT
ATTTCGTCCC TGGCCATTGC ACTTGATTTT CTAAACCTTC AGAACCAGCA TCCCAAAAAA
ACGCTGATCT TGTCTGATAT TTATGAAACA GGTAAAACCA ATAGGGTACT TTATACTGAA
ATTGCAGCGC TATTGAAACA AAAGCATGTA GACAGGCTCA TTGGTATTGG TACCCATATT
AGCGAATCGG CCTCTTTATT TGATATGGAA GCCAGTTTTT ATGAAAGTAC TCAAGCATTT
ATTGATAATT TTCCTGCACT CCATTTTAAT AACGAAACCA TTTTAGTGAA AGGGGCCAGG
AGATTTGAAT TTGAGCGGAT CAGTAAGCTG ATTGCACAAA AAGTACACGA TACCGTAATG
GAAATTGACC TTAATGCATT GGCAGGTAAC CTGCAGTTTT ACCGCAGTAA ACTACTGCCT
GGGGTTAAGG TTATGGCTAT GGTCAAAGCT TTTTCTTACG GCAGTGGCAG TTTCGAAATA
GCCAATTTAT TGCAGTACCA CAAAGTGGAC TATCTGGCTG TTGCCTATAC TGATGAAGGC
ATTTCATTAA GAAAGGCTGG TATAACGCTA CCTATTATGG TAATGAGTCC CGAACCTTCT
GCTTTTGATG CCATCATCAG GTATAACCTT GAACCCGAAA TCTATAACAT TGAAATTTTG
CAGGGTTTTA TTGGCTTTTT GAAAACCGAC CAATATCCTA TTCATCTGAA AATTGATACC
GGAATGCATC GACTGGGATT TGAAGAACCT GATTTATCTG ACTTGTTAAA GGTGTTGACT
GAAACCAGAA AAGTTAAAGT GGCTTCTGTA TTTTCCCATC TTGTGGGAAG TGAAGATGGG
CTGCATGATG AATTCACCCG GCATCAGATT GAACGGTTTA CAGCCATGAC AGAACTGATT
AGCGAAACAC TGCACTACCC CTTCATCAGG CACATTTCCA ATACTTCTGG TATTTCGCGC
CATCCTGAAA CACAACTGGA GATGGTACGA CTTGGAATTG GTCTATATGG TTTTGATGCT
GCATTAAAAA ACAATACCGC CCTCCAGACA GTTGCTATCC TAAAAACCAC CATTACCCAA
ATAAAGCACC TTAAACCAAA TGAAACTGTG GGGTATGGCA GGAAAGGTCT GTTGCCGAAA
GGTGGTACAA TTGCTACTGT AAAAATTGGT TATGCCGATG GTTACAGTCG TGCCTTTGGA
AATGGAACAG GTCGCATGCT GATCAAGGGG AAACTTGTAC CCACTGTTGG AGTAATCTGT
ATGGATATGT GTATGCTGGA TGTAACAGGG CTGGATGTGA AAACAGGGGA TGAGGTAATT
GTGTTTAACA ATGAGCTTAG CATTGCTCAA CTGGCTACTC AGATCGGAAC TATTCCTTAT
GAAATTCTCA CTAATGTATC TCAAAGGGTA AAACGCGTGT ATTTTTATGA ATAG
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| Protein sequence | MSSLIYNIKH IAGILGIKNF EVQKDAIISK LVIDSRSVID PDGSLFFALK GQRDGHGFLK
DAYANGIRNF VISEAKYTRL FPDANILLVQ DVLLALHTIA KYNRNQYDLK VLGITGSNGK
TIVKEWLYQL LAADHNIVRS PKSFNSQIGV PLSVWEITAI HTLGIFEAGI SKTDEMDALA
SMIKPNVGIL TNVGEAHAEG FVSLKEKLLE KLKLFNDADL FIYAPEYTAG LSTDDLPGKT
KFSWSKKQQA DLQILFVEPI DGKNYIRADF KGIEIECLIP FSDQASVENG IICWATLLAL
GYTPEEADKR LEKLTRVSMR LELKNGINQC SVIDDSYSAD ISSLAIALDF LNLQNQHPKK
TLILSDIYET GKTNRVLYTE IAALLKQKHV DRLIGIGTHI SESASLFDME ASFYESTQAF
IDNFPALHFN NETILVKGAR RFEFERISKL IAQKVHDTVM EIDLNALAGN LQFYRSKLLP
GVKVMAMVKA FSYGSGSFEI ANLLQYHKVD YLAVAYTDEG ISLRKAGITL PIMVMSPEPS
AFDAIIRYNL EPEIYNIEIL QGFIGFLKTD QYPIHLKIDT GMHRLGFEEP DLSDLLKVLT
ETRKVKVASV FSHLVGSEDG LHDEFTRHQI ERFTAMTELI SETLHYPFIR HISNTSGISR
HPETQLEMVR LGIGLYGFDA ALKNNTALQT VAILKTTITQ IKHLKPNETV GYGRKGLLPK
GGTIATVKIG YADGYSRAFG NGTGRMLIKG KLVPTVGVIC MDMCMLDVTG LDVKTGDEVI
VFNNELSIAQ LATQIGTIPY EILTNVSQRV KRVYFYE
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