| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3004 |
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| Symbol | |
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| ID | 8254116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 3596495 |
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| End bp | 3597355 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644936653 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003093264 |
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| Protein GI | 255532892 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.628061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.610809 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGACAAC TCAAAATCAC GCAATCAATT ACCAACCGCG AAAGTCAATC ATTAGACAAA
TACCTTCACG AGATTGGTAA AGTGGATTTA ATCACGGCAG AAGAAGAAGT AATACTGGCA
CGGAAGATAC GGGAAGGGGA TCAGGCTGCA TTAGAACGTT TAACAAAAAC CAATTTACGC
TTTGTAGTTT CCGTAGCAAA ACAATATCAG AACCAAGGTT TAACCCTTGG AGATTTGATT
AACGAAGGCA ATCTGGGCTT GATTAAGGCA GCGAAACGTT TTGACGAAAC TAAAGGTTTT
AAATTTATCT CTTATGCGGT TTGGTGGATT CGTCAATCAA TTTTACAGGC TATTGCTGAG
CAAAGCCGGA TTGTGCGTTT ACCTTTGAAC CAGGTTGGCT CATTAAGCAA AATCAGTAAG
GCATTCTCAA AATTAGAGCA GGAGTATGAG CGTGAGCCCT CTCCTGAAGA ATTGGCAGAC
ATTTTAGAAA CTACAGTTGA TAAAATTTCA GATACCCTAA GTAATTCTGG CCGTCATGTA
TCTATGGATG CCCCTTTTGT TCAGGGCGAG GAAAATACTT TGCTTGATGT ATTGGAAAAT
CATGAACCTA ATACAGATAG CAGCCTGATC AATGAATCTC TTTCAGAGGA AATAAAACGT
TCCCTGTCTA CATTAACAGA ACGTGAACGT GAAATCATTG TACTGTTCTT TGGTCTAAGT
ACCAATCATC CACTTTCATT AGAAGAGATT GGCGAAAAAT TTAATTTAAC ACGCGAGCGT
GTCCGCCAGA TCAAAGATAA AGCTTTACAA CGTCTGCGCC ATACTTCAAG AAGTAAAATC
CTGAAGTCAT ATTTAGGATA A
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| Protein sequence | MRQLKITQSI TNRESQSLDK YLHEIGKVDL ITAEEEVILA RKIREGDQAA LERLTKTNLR
FVVSVAKQYQ NQGLTLGDLI NEGNLGLIKA AKRFDETKGF KFISYAVWWI RQSILQAIAE
QSRIVRLPLN QVGSLSKISK AFSKLEQEYE REPSPEELAD ILETTVDKIS DTLSNSGRHV
SMDAPFVQGE ENTLLDVLEN HEPNTDSSLI NESLSEEIKR SLSTLTERER EIIVLFFGLS
TNHPLSLEEI GEKFNLTRER VRQIKDKALQ RLRHTSRSKI LKSYLG
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