| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2942 |
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| Symbol | |
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| ID | 8254053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3507104 |
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| End bp | 3507874 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644936590 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_003093202 |
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| Protein GI | 255532830 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.351374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGTAC TTGATTTATT TAATTTAAAA GGAAAAATAG CTTTGGTTAC CGGTTGTAAA
CGCGGTATTG GCAAGGCAAT GGCCGAAGCA TTGGCTGAAG CCGGGGCAGA CATCATTGGG
GTGTCGGCCA ATCTGGAACT TGAAGGCAGC GAAGTTGCCG GAGCTGTAAC TGCATTGGGA
AGAAAATTTT ATGCTTATCA GTGTAACTTT AACGAGCGCG AAGCGATCAA TTCATTTTGT
GCACAGGTAA AGGCAGATCA TCCGGTAATC GATATCCTGG TGAACAATGC GGGCACCATT
CTGAGAAAAC CTATTGCCGA GCATCCCGAC GAGTTCTGGG ATGAAGTGAT CGCAGTAAAC
CAGACGGCCC CTTTTATCCT GACCAGGGAA ATTGGAAGGG ACATGATAGC CAGGGGAAGC
GGTAAAGTGA TCTTTACAGC CTCTTTGCTT ACCTTCCAGG GGGGCATTAC CGTACCGGGT
TATGCTGCCA GTAAAGGTGC CATTGGTCAG TTAACCAAGG CTTTTGCCAA TGAATGGGCC
GCAAAAGGCG TAAATGTAAA TGCCATTGCA CCCGGCTATA TCTCTACCGA CAATACTACG
GCATTAAGGG CCGATGAAAA CCGGAGCCGC TCTATCATGG AACGCATCCC TGCAGGCCGC
TGGGGTGAAG CCGAAGATTT CAAAGGGCCT GTGGTATTCC TGGCATCGGC AGCATCAGAT
TACATGCACG GTACAGTGAT GACAGTCGAT GGTGGCTGGA TGGGCAGATA A
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| Protein sequence | MAVLDLFNLK GKIALVTGCK RGIGKAMAEA LAEAGADIIG VSANLELEGS EVAGAVTALG
RKFYAYQCNF NEREAINSFC AQVKADHPVI DILVNNAGTI LRKPIAEHPD EFWDEVIAVN
QTAPFILTRE IGRDMIARGS GKVIFTASLL TFQGGITVPG YAASKGAIGQ LTKAFANEWA
AKGVNVNAIA PGYISTDNTT ALRADENRSR SIMERIPAGR WGEAEDFKGP VVFLASAASD
YMHGTVMTVD GGWMGR
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