Gene Phep_2904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2904 
Symbol 
ID8254015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3465739 
End bp3467232 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content44% 
IMG OID644936552 
Productamino acid/peptide transporter 
Protein accessionYP_003093164 
Protein GI255532792 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00155043 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCGAAC AATTGACATT AGAAGAAATC CAGGATTTTA AGGGCAAATA CCCTAAACAA 
CTCTGGGCGC TGTTCCTTGT AGAAATGTGG GAACGTTTCT GCTTTTACGG GATGCGGGGA
ATGCTGGTCA TATTTATGAT CGACAAGGTG CTTGGCCTGG CACTTACAGA CAAGAGTGCC
AACCTGCAAT ATGCGGCCAT ACAGGCCTTT GTGTATACCT TTACCTTTCT GGGTGGTATT
TTTGCCGACA AAGTGCTTGG CTTCAGAAAA TCACTGTTCT TTGGTGGAAT GGTGATGGTG
CTTGGCAACC TGATCATCGC CACATCGCCT AAAGAGCTTT TCTATATCGG CATTACGCTT
TCCATTATCG GGACCGGCTT TTTTAAGCCC AATGTTTCTT CAATGGTAGG CGAATTGTAT
AAAGATGGTG ATGGCCGCAG GGATGCCGGT TATGGTTTGT TCTATGCTGG CATAAATGTA
GGCGGTTTAC TGGGTGGTGC TTTATGTGTA TACCTGGGTA AGTACGTTTC CTGGAATTAT
GCTTTCCTGG CAGCGGCCGT TGTCATGGCG CTGGGACTGG TTACCTTTAT TTTTACCCAG
AAAACCCTGG GCCCTATCGG TGATTCTCCT TTAAAGCATA TGCCGCTAAA TAAAAGAAGG
ATGCGTGAAA TCGGTGTTTA CCTTCTTTCG CTGATCTCTA TACCACTGAT CCTGATCATG
GTGCAAAACA CCAGGTACAC GGATTATTTC ATGTATACCA TTGCACCTGT TGCGATTATT
TATTTTTTGT ACGAAACCTA TACGGTTAAA GACCATAAGT TCAGGCTAAA ACTCTTTGCA
GCCTTTATAT TTATCTTCTT TTACTTTCTG TTCAATGCCA TTTTTGAGCA AAGTGGTGGT
TCTTTATCGC TTTTTGCGGC CGAGAATTTA AACCATAGCC TCCTTTTCTT TAACATCGAC
CCCAATGTGG TCAACAACAG CTCCAATTCT TTTTTTGTGA TCCTGTTTAG TCCTTTAATT
GGTTTGTTAT GGTTATGGCT GGCCAAAAAG AAGATAGAGC CCAACTCGAT CATCAAATTT
GGTATTGGCT TTCTGTTTCT GGGTGCTTCT TTCTATATTT TCTTTTATAC CCGTTTCTTT
GCCGATTCAA ATGGCATAAC TTCCTTAAAC CTGTTTACTT TTGGTTACCT GGTAACCACA
CTGGGCGAGC TGTGTTTAGG GCCTATCGGC ATGTCGCTGG TTACCCAGCT TTCACCCAAG
CGCTTAACAG GGATGATGAT GGGCATGTGG TTCCTGGCCA GTGCATTCGG ACAGTTTGCT
GCTGGTAAAC TGGGTGCCGA TATGTCGGTA AGTGACGAGC ATGCCTCTTT GGTTACCAAA
CTGCAATCGT ACACGGATGG ATACTACCAG CTGGCCATTT ATGCTGCTGT TGCCGGTGTA
TTTTTAATTG TATTCTCACC TTTGATCAAA AAACTGATGC AGGGCGTCAG TTAA
 
Protein sequence
MAEQLTLEEI QDFKGKYPKQ LWALFLVEMW ERFCFYGMRG MLVIFMIDKV LGLALTDKSA 
NLQYAAIQAF VYTFTFLGGI FADKVLGFRK SLFFGGMVMV LGNLIIATSP KELFYIGITL
SIIGTGFFKP NVSSMVGELY KDGDGRRDAG YGLFYAGINV GGLLGGALCV YLGKYVSWNY
AFLAAAVVMA LGLVTFIFTQ KTLGPIGDSP LKHMPLNKRR MREIGVYLLS LISIPLILIM
VQNTRYTDYF MYTIAPVAII YFLYETYTVK DHKFRLKLFA AFIFIFFYFL FNAIFEQSGG
SLSLFAAENL NHSLLFFNID PNVVNNSSNS FFVILFSPLI GLLWLWLAKK KIEPNSIIKF
GIGFLFLGAS FYIFFYTRFF ADSNGITSLN LFTFGYLVTT LGELCLGPIG MSLVTQLSPK
RLTGMMMGMW FLASAFGQFA AGKLGADMSV SDEHASLVTK LQSYTDGYYQ LAIYAAVAGV
FLIVFSPLIK KLMQGVS