Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2886 |
Symbol | |
ID | 8253996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3436702 |
End bp | 3438894 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644936533 |
Product | hypothetical protein |
Protein accession | YP_003093146 |
Protein GI | 255532774 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.179721 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGTTCA TCAAAAAAAT AGTTCAGCTA AAGATATATG GGGCAGCGCT GTTGCTGCTG ATCTTTCTAA GCATCAGTTT TTCATCGCAA GCCCAGCCAA AACAGGATAT CTATGTGCAG GTTGATGCAA AAACAGGAAA TTATTCGGTC AGCTCATCCA GTCTCAAATG GACCATGAGT GGCAGCATAG GGAAGGCCCT CAATCGTTTA AAAAAAGAAA AGGGAAAAGA CGTTATTGGA ACATATACCG ATATCTCTTT TCAGTGGGAA GGCAACAATC TGTATAAGGG TAGTATCCGC TGGTATGCCG GATGCCCGGT CGTGTTGTTT TCTTTAACCA CCCCAAAGGG AGCAGATGGT CAGTCTACGG AGGCCTTTCC TGATTTTACC CGCATGCCAG ACTCTTTGTA CCACTACAGT TATCATAACC GGATATTTCC ACTGGCACAG TATTTTTTAG AGGAAACATC TACCCCCTGG TTGTTCTTCA ATGGTAAAAA CGACGCCGCC ATTTTATCGC CTGCATCGGA TTTTATGGTG TCGCTCATGA CAGGTGACGG TACTACCCAC GTGAGGAGTG GCCTTAATCC GGAAGTACAA AAGCTTCCCG CAGGTTTTAC CCATTCTTCT ATCCTGGTGA TGCGCAAGGG TATACGCAAT ACCTGGGACG AATGGGGTGC CGCATTGCGT AAAACCTATC ACAGAAAAAT TCCGGCAAAT GATGCCGATG TAGTGCTCAA ATACTTTGGC TGCTGGACCG ATGTAGGCGG TGATTATTAT TACAATTACG ATCCGGCAAA AGGTTATGAT GGTACCCTGC TGGCCCTTAA AGAACATTAT AAAAAAGAGG GCATTCCATT GGGCTATATG CAGCTGGATA GCTGGTGGTA CCAGAAGTCC ACTACGAGTG TACACAATGT ACCTGGTGGC ACAAAAAAGA AAGCGGAATT TCCTGAAGGC CCCTGGAACC GGTCGGGCGG TTTAATGGAA TACAAAGCCG ACACCGCTTT GTTCCCGAAC GGGCTTGCTG CTTTTCAGCA GCAGCTGGGA CTGCCACTGG TAACGCATAA CCGCTGGATT GATCGTGCCA GTCCTTACCA CAAACGGTTT AAGATCAGTG GTATCGGAGC GATTGATCCG GCTTTCTGGA AAGAAATTAT GGGCTATCTG AAAAGTTCGG GAGTAGCGGT ATACGAGCAG GACTGGATCA ATTACATCTA TACCAATAAT CCGGAAATGA AATCGGACAT CAATGTGGCC AATGCTTTTA CAGATCATAT GGCAAAGGCG GCGCAGGATG CGGGCATCAA CCTGCAATAT TGCATGGGCT TGCCCAGGTA TTTTATGCAA GGTGTAAAAT ACAATAACCT GACTACCATC AGGACAGCGG GAGATCGCTT TATGCCCAAA AGATGGATGT ACTTTTTATT TACTGCACAG CTGGCTTATG AAATGGGCAT CTGGCCCTGG AGTGATGTTT TTAAAAGTTC TGAAATCGAC AATATGATTG TATCTGTGCT ATCGGCAGGT CCGGTAGGCA CCGGTGACCT GATTGGTACA GAAAGCAAGA AAAATATCCT GATGGCCTGC CGTGCCGATG GTGTGCTGGT TAAGCCGGAC GAACCGTTAT TGCCGCTGGA CCAGAATTAC GTGCAAATGG CCCGTAAGGA AGAAAAACCT ATAATAGCAG CCACGCACAC GCTACATGGT AACATAAAAA CAGGCTATGT TTTTGCATTT GGAAACGATA CCACTAAGAT CAACCAGTTC AGTTTTGGTT TATCTGAACT GTCGATGAAA GGCCGATCGG TCGTATTTAA TCCACAAAAA CATACGGTAC AAGTGCTGGA GGCAGGAAAA AGATTTAGTG CAGACTTGCC GGAAGAAAAG TATGCCTTTT ACATTGTGGC ACCCATCACC GCTTCAGGAA TTGCCTTTCT GGGAGATGCC GGAAAAATAA CGGCTACAGG AAAAAAACGC ATTGCCGGTA TCATCGATGC CGGAAAAAAA CTGCAGGTAA AAGTATTGTT TGCCAAAGGG GAACCAGCGG TAACCTTACA GGGCTATTCC CTGCAGCGCA TAAAATCCAG CAAAGGGAAA CTGAGCCAGG ATGCAGCTAC CCATTTATTT ACCGTAGTTG TGCCACGGCC CGCAAAAGGT GATGTAGAAA ATTTAACACT TCAAACAAAC TAA
|
Protein sequence | MQFIKKIVQL KIYGAALLLL IFLSISFSSQ AQPKQDIYVQ VDAKTGNYSV SSSSLKWTMS GSIGKALNRL KKEKGKDVIG TYTDISFQWE GNNLYKGSIR WYAGCPVVLF SLTTPKGADG QSTEAFPDFT RMPDSLYHYS YHNRIFPLAQ YFLEETSTPW LFFNGKNDAA ILSPASDFMV SLMTGDGTTH VRSGLNPEVQ KLPAGFTHSS ILVMRKGIRN TWDEWGAALR KTYHRKIPAN DADVVLKYFG CWTDVGGDYY YNYDPAKGYD GTLLALKEHY KKEGIPLGYM QLDSWWYQKS TTSVHNVPGG TKKKAEFPEG PWNRSGGLME YKADTALFPN GLAAFQQQLG LPLVTHNRWI DRASPYHKRF KISGIGAIDP AFWKEIMGYL KSSGVAVYEQ DWINYIYTNN PEMKSDINVA NAFTDHMAKA AQDAGINLQY CMGLPRYFMQ GVKYNNLTTI RTAGDRFMPK RWMYFLFTAQ LAYEMGIWPW SDVFKSSEID NMIVSVLSAG PVGTGDLIGT ESKKNILMAC RADGVLVKPD EPLLPLDQNY VQMARKEEKP IIAATHTLHG NIKTGYVFAF GNDTTKINQF SFGLSELSMK GRSVVFNPQK HTVQVLEAGK RFSADLPEEK YAFYIVAPIT ASGIAFLGDA GKITATGKKR IAGIIDAGKK LQVKVLFAKG EPAVTLQGYS LQRIKSSKGK LSQDAATHLF TVVVPRPAKG DVENLTLQTN
|
| |