| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2850 |
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| Symbol | |
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| ID | 8253958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 3398340 |
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| End bp | 3398918 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 644936496 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003093111 |
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| Protein GI | 255532739 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.105417 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAACTT ATTGCTCATA TACTGATGCG GAGCTTACCA CCTTATTGAA GGACGGAGAC
CGTGTTGCCT ATGCTGAAAT TTATGAACGC TATAAGAACT TACTGTACAT AAATGCCTTC
AAGAAAACCG GGAACAGTGA CGATGCACAG GATATTATTC AAGAAGTTTT TATTATGCTT
TGGGCAAAAC ACAAAAAGCT TGTTATCAAC AAAAATTTGG CTTCATTTTT ATATACCTGT
ATCCATCATA AGGTACTTGA TCTTTTTACA CACCAGAAGA TAGATGAAAG GCATGTTACG
AAATTAAAAG ATTTTCTTCT CCTGACAAGT AATAATACAG ACTATAACAT CAGAGAAAAG
CAGCTAGCTC TTATTATTGA ACGTGAGATT GCAGCATTAC CAGAAAAAAT GCGGGAAGTA
TTTGTTTTGA GCAGGTACGA AGGATTAAGC CAAAAAGAAA TTGCATTGAC GATGAATATT
TCGGAAGAGA CCGTGAAAAG CCAGGTAAAA AATGCACTGA AAATTTTACG AACTAAGCTG
GGATTATTTA CCTTTCTGCT ATTTTTAATT CGGTTTTAA
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| Protein sequence | MTTYCSYTDA ELTTLLKDGD RVAYAEIYER YKNLLYINAF KKTGNSDDAQ DIIQEVFIML
WAKHKKLVIN KNLASFLYTC IHHKVLDLFT HQKIDERHVT KLKDFLLLTS NNTDYNIREK
QLALIIEREI AALPEKMREV FVLSRYEGLS QKEIALTMNI SEETVKSQVK NALKILRTKL
GLFTFLLFLI RF
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