Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2840 |
Symbol | |
ID | 8253948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3382611 |
End bp | 3385580 |
Gene Length | 2970 bp |
Protein Length | 989 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644936486 |
Product | polysaccharide lyase family 8 |
Protein accession | YP_003093101 |
Protein GI | 255532729 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.109346 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0108324 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA CAATATTGAT ATGCTTGATT ATTTTTCTTA ATCTGGGTGT ATTTGCCCAG GAAAAAATAT TCGCCGGTTA TTTCGATGTA GAAGTCAATA GTCCCGCCAA TACGGAGGTA ACAGGACGTA TACATCTGGA AAGAAATAAG GATGTATTGA AGCGCCCTGT CCCTAAAACC TATCAGTTTG CCATAACCAG TCAAAAGAAC AATTTGTTTA GCATTGAAAC CCGTTTTGAT CCAGTTGGTA GAATCATGGG AGTACTTTCT ACGAAGCAAA AGTTGGGAGA AAACCTATTG GGAAATCAGC AATTAACGAT AGTGTTAAAA GATGGGTCAA AACAGCTTAA TTCTTTTCCA ATTACCATAA AAGTAGTTAA GGAAACCCTG TGGAAAACAC TTTATGAGCG ATATAAGGAT TATACAGTAT CGTCTGAAGG GAGTAGAATG TATGGTAGAA AACTCATTTC GGATGTAAAA GTAGCCGAAA TGATTACTGA ACTGGAAAGT AATAATGGCA AATTTGCAGC ATTTGGTTTT TACGGCAAAA ATCCGATGGA ATATAAAAGC CCTGGTGGAA AAACGATAGA ATTTGAGTGG GAACAAGTGG CAAATCAAAT TGGTGGTTTG GGCTACGCTT ATGCCAAATC AAAAAAGTAT GGACCAAATG GCGATCCGCA GGCCCGTATG CAGTTAAAAA ATGCTTTATA TTCAGCTATT ATCGCTTATA CGGAGAGCGT TCCGGTTGAA GGTTCAGATG TAATGGTAAA GGGTAAGCCG ATAGGCCCGT ATACGGGCGA CGGTTTTAGT AACCTGAAAG AGTATAACCT GGTGGGAACC CAGGTGGTAA CCCACCAATG GGTTATTTCT GATGCGCTCA TTGCACCATC AGTACATTTA ATACCAGATA TGCTTACAGA CATTAAACAG GGCAACAAAC AGGCCGAACG TGTGTATTAC GATTTTATAC GTTTTTACCA AACCGCAATG GCCGAAATGA TCGGCAGAAG ATCGATCGAT AAATCGGACG ATAAAGAAGA GGGTGGTCGC TGGGGGATAT TGCAGGATAC CCTTCGTTCA TCAGGTGCCT GGGCAGATGC CAACCTGGGG CACAGAGGTC GCTGGATGTT GGCCATGCCC ATTGTTTGGG CAGATTATAA CCGGCCTTTA ACTTATGTGC AATACTGGTA CAGTGATTTC TATAAGGATA AACCATTTAA AAATTTTAGT TTTTCTTACG GATGGAGCCC GCATGGTGTT GCAGCTGATG TGTCCAGGTG GTTAACCAAA TTTAATGTAC CTGCTCACGA ATACAAACAA TCTGGTTTTC AGCCAGATGG AACCATATCA CACCATATTG CTCAGGGTAC TGATGCGGCT ATGCAGGCTT ATGGCTTTGG ATGGCTTGTT GAAGCATTTG TTGGTTTTAA CCAGTTTAAA GATACGGACT TTAAGCTGGC CGATAAATAT TACCAGTTTC CTGCCGATAG GCTGGTAGGT ACTTATCCGA AATTGATTTA TAAAAACCGC CTGGATTTTT TAGTATCCGG GAGGTCTTAT GGAGAGGATC TGCAGAAGTT TGTTACCAAA GTTTATTTGT CTGCTTTTGA AGATTTGCAG GAGGCACGAA GCAAAGATAC GAAGCTAAGC AACCAGGCCG AACTGGATGA AATATACAAT AAGATCAAAA AAAATAAATT TGAATATTCC GGTACTGATG CTTTTTGGGT AAATGAGTTT TTGGTGCATC GCCGGGGCGA AAATGAAAAA CCTTTTTATG TATCGCTAAA ATTAAAATCG AAACGCACGG TTGGGGCTGA AGATTTTGGA AACATACGCA GGTCCTGGTA TGCAGGTTAC GGGATTCTTC CACTAAAAAT AAGTGGCGAT GAATATTCGG ATAAAGTACT GGCCAACCTG GACTGGCATG CTCTGCCCGG TCTAACTGAA GAATGGCGTA GCGATGCTAT TCCGGTTGGC CATGCACAGG CTTCTTTGCC AGGCGATAAT GAGGTGGCTG GTGTAACGTC GGATGGACGA TCGGGTGTAG CCATTTATCA CCATCTGCCA AGGGAAACAT ACAGCTCTGC TACAGCTTTA AAGAGCTATT TTTTTATAGC CGATAAAATC ATCGCCCTGG GCAATAACAT CAAAAGACTG CGCCCCGGTC AGCAAAAAGA GATTGTAACG ACGCTTGATC AGTCAGCATT TACCCAGCCG CTAACCATCG CCCAAAATGG TAAAACTGAA GTGGTACAAC CAGGACAGTC GGTTAATCTT TCTTTTGAAG CTGATAAACC TGTTTGGTTA CATATTGGCA ATAAGGGGTA TATCATTTAT CCGGATGGAA AACAAAAGAT AATCGTTAAA ACCGGAACTG AAATAAATAT TACCGACCCT GCCAATGCAT CAAAAACGCC TGGTTATATC ATTGCGGTCA ATCACGGACA GGAACCTGCA ACAGGTAATG GTTATAGTTA TTTTCTGGTA CCTAATGTTT TGGCCACAGA AATGCCTGCT GTACTTGCCA CTTATGCAAA AGATGTACAG ATAAAAAAGG CTATAGATGC ACATGGGGTG TATTCGGCAA CAGATAAAAC CTGGCAAACG GCTTTTTTTA AAGGGACAGC AATCACAGTG GGCGGGTTAA CCGTAAAGGC TGAAACGCCT GCTTTGATGA TTTTGAAAGA CAATGGCAGC AATTGGAAGC TGACAATGAG CAACCCTTCA CCATCTGCCG ACAAACAACA ATTGGTCTTG TATGTGTCAC AACCGCTCAG GGCTGGTAAG TATGATTATA TGTTGGGTGG TATCTATCCC CGCAAGGGCG AGTATGTAAC GGTCTCGGCC GAAGGTACAG GTTCTAAAAT TGTGGCAGAA CTTCCTGATA AAAGGGATAG TGCTTTTTAC AATTACCAGG AGGTATTGTA TAATGCCGCA CCAGTTAGTA TAGAAATTCC AAAGAAATAA
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Protein sequence | MKKTILICLI IFLNLGVFAQ EKIFAGYFDV EVNSPANTEV TGRIHLERNK DVLKRPVPKT YQFAITSQKN NLFSIETRFD PVGRIMGVLS TKQKLGENLL GNQQLTIVLK DGSKQLNSFP ITIKVVKETL WKTLYERYKD YTVSSEGSRM YGRKLISDVK VAEMITELES NNGKFAAFGF YGKNPMEYKS PGGKTIEFEW EQVANQIGGL GYAYAKSKKY GPNGDPQARM QLKNALYSAI IAYTESVPVE GSDVMVKGKP IGPYTGDGFS NLKEYNLVGT QVVTHQWVIS DALIAPSVHL IPDMLTDIKQ GNKQAERVYY DFIRFYQTAM AEMIGRRSID KSDDKEEGGR WGILQDTLRS SGAWADANLG HRGRWMLAMP IVWADYNRPL TYVQYWYSDF YKDKPFKNFS FSYGWSPHGV AADVSRWLTK FNVPAHEYKQ SGFQPDGTIS HHIAQGTDAA MQAYGFGWLV EAFVGFNQFK DTDFKLADKY YQFPADRLVG TYPKLIYKNR LDFLVSGRSY GEDLQKFVTK VYLSAFEDLQ EARSKDTKLS NQAELDEIYN KIKKNKFEYS GTDAFWVNEF LVHRRGENEK PFYVSLKLKS KRTVGAEDFG NIRRSWYAGY GILPLKISGD EYSDKVLANL DWHALPGLTE EWRSDAIPVG HAQASLPGDN EVAGVTSDGR SGVAIYHHLP RETYSSATAL KSYFFIADKI IALGNNIKRL RPGQQKEIVT TLDQSAFTQP LTIAQNGKTE VVQPGQSVNL SFEADKPVWL HIGNKGYIIY PDGKQKIIVK TGTEINITDP ANASKTPGYI IAVNHGQEPA TGNGYSYFLV PNVLATEMPA VLATYAKDVQ IKKAIDAHGV YSATDKTWQT AFFKGTAITV GGLTVKAETP ALMILKDNGS NWKLTMSNPS PSADKQQLVL YVSQPLRAGK YDYMLGGIYP RKGEYVTVSA EGTGSKIVAE LPDKRDSAFY NYQEVLYNAA PVSIEIPKK
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