| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2830 |
|---|
| Symbol | |
|---|
| ID | 8253938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3365185 |
|---|
| End bp | 3366393 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644936476 |
|---|
| Product | glycosyl hydrolase family 88 |
|---|
| Protein accession | YP_003093091 |
|---|
| Protein GI | 255532719 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0365381 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAC TACTCAGTGC GTTTGTTGCG ACTATTGCAT TAATAGGATC TGCAAACGGG
ATGACAGTTA CGAAAGGCAA CGGCGATGAC TGGTTAAAGA AATCAACTAA AACCGCAGTA
ATACAGTTAA CACGGGCTGC ACAAACCTAT ACACCAGGAA TGAACCCAAG GTCTGTCAAT
CCGGACGGGA CGGTAAGGCT GGCCCCTCCC CGCGACTGGA CCACAGGTTT TTTCCCGGGA
ACGTTGTGGT ATGGTTATGA ACTATCGGGC GATAAAAACC TGGCGGCCGA AGCCAAAAGA
TTTACCCTTG CCTTAGATAC GATACAATAT GTTAAAGATA CGCACGACCT GGGCTTTATG
TTGTATTGTT CTTATGGCAA TGCCTACCGT GTAACCGGAG ACAAGATTTA CCTGAAGCCA
TTAGAAAACG GTGCGGCCAA TTTATATGCC CGTTTCAATA AAAAAGTAGG GGCCATCCGC
TCATGGGATT TCGGACACTG GCAATTTCCG GTAATTATAG ACAACCTGAT GAACCTGGAG
TATTTATACT GGGCAGGAAA GGAATTCAAT AAGCCAGAAT GGTTCGATGC TGCTAAAACA
CATGCGGTTA CGACCATGAA AAACCATTTC AGAAAAGATT ATAGTTCTTA CCATGTGATC
AGTTACGATA CCCTGTCTGG AAAAGTACTG CAACGTGAAA CCCATCAGGG ACTTACCAAC
GAATCGGCCT GGGCACGGGG GCAAGCCTGG GGACTTTACG GCTATACCAT GAGCTATAAG
GATACGAAAG ACAAAAAATT CATCGAACAT GCAGAGCATA TCGCTGCTTT CATCATGAAC
CACCCTGCAA TGCCGGCAGA TAAAATTCCA CTTTGGGACT TTGATGTCCA CAACCGCGAC
AGGTCGCCAA GGGATGCTTC TGCTGCTGCA GTAATTGCTT CAGCCCTGCT AGACCTGAGC
ACGCAGGTAA AAGATGGTCA GAAATATTTT AAATTTGCCG AGGATATCCT GAAAACATTG
TCATCAGATG AATACCTGGC GAAACCCGGC GAGAACCAGT TTTTTATATT GAAACATAGT
GTAGGTGCAT TGCTGTACAA TTCGGAAATC GATACACCTT TGAATTATGC CGACTATTAC
TATCTGGAGG CTTTAAAACG CTATGCAGAG ATTAAAAAAA TTGACCTGAA AACAATTAAT
CAGTCTTAA
|
|---|
| Protein sequence | MKSLLSAFVA TIALIGSANG MTVTKGNGDD WLKKSTKTAV IQLTRAAQTY TPGMNPRSVN
PDGTVRLAPP RDWTTGFFPG TLWYGYELSG DKNLAAEAKR FTLALDTIQY VKDTHDLGFM
LYCSYGNAYR VTGDKIYLKP LENGAANLYA RFNKKVGAIR SWDFGHWQFP VIIDNLMNLE
YLYWAGKEFN KPEWFDAAKT HAVTTMKNHF RKDYSSYHVI SYDTLSGKVL QRETHQGLTN
ESAWARGQAW GLYGYTMSYK DTKDKKFIEH AEHIAAFIMN HPAMPADKIP LWDFDVHNRD
RSPRDASAAA VIASALLDLS TQVKDGQKYF KFAEDILKTL SSDEYLAKPG ENQFFILKHS
VGALLYNSEI DTPLNYADYY YLEALKRYAE IKKIDLKTIN QS
|
|---|
| |