| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2818 |
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| Symbol | |
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| ID | 8253926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3342182 |
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| End bp | 3343810 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644936464 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003093079 |
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| Protein GI | 255532707 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCATCA AGAAAATAGC CGAAATGAAG TTTTATAGCC CTTGCCCTGT ATTTAAGATA
ATCGTTGTCC TTTTTACTTG CCTGCTAAGC TTTGGTTTAA GTTCCAATGC ACAATCCTAT
TACAATGTAT TGAAATATGG AGCAAGGAAC GACAGCAGCA AACTCGCAAC CCAGGCCATT
AAAAAAGCGA TTGATGCGGC TTCAAAAGCG GGTGGCGGAA CGGTTTATTT TCCTGCGGGA
AAATACCTTA CAGGGGCTAT TCACCTGAAA AGTAACATTA CCATTTTTAT TGACGCAGGG
GCGGAACTAC ATTTCAGTGA TAATTTTGAT GATTATTTGC CGATGGTAAA AAGCAGGTAT
GAAGGGGTGG ATGTGACTAG CTTTTCGCCT TTATTTTATG CTTATAAAGC TGAAAATATT
GCCATTACCG GGCGTGGTAT TATAGATGGC CATGGTAAAA AATGGTGGGA TTTTGTAGAA
GGGTATAAAG CAGACCAGCC ACGTTCTAAA TGGCAATATA TGTTCGACGA CCTGAACAGG
GAGATCTTAT TGCCGGATGA TCCGAAGCAG ATGAAAAGGG GCTTCCTGCG TCCGCCATTT
ATTCAGACCA TGTACTGTAA AAATGTATTT ATTGAAGGGA TAACCATTCG CAATTCCCCA
TTCTGGACGG TTAATCCGGA GTTTTGTGAA AATGTAACCA TACATGCGGT AACTATCAAT
AACCCGGGTT CTTTTGCACC AAATACAGAT GGGATTAATC CTGAATCCTG TAACAATGTA
CACATCTCCA ATTGCCATAT CAGTGTGGGT GATGACTGTA TTACCATTAA ATCGGGCAAG
GATGCACCGG GCCGGAAAAT GGCAGCGCCG GCACAGAATT ATACCATTAC CAATTGCACC
ATGTTATCGG GCCATGGCGG TGTAGTGATA GGCAGTGAAA TGTCTGGTGA TGTACGAAAG
ATCAGCATTT CCAATTGTGT ATTCGATGGA ACAGACCGCG GGATCCGTAT TAAATCTGCA
CGCGGCAGGG GTGGCATAGT CGAAGAGATC AGGGTAGACA ACATCATCAT GAAGAATATA
AAACAACAGG CAATTGTGCT CGATCTGCAG TATGCTAAAA CAACATTAGA ACCGGTTTCC
GAACGTACGC CAAGGTTCAG GAACATTCAT TTCAGCAACA TTACCGGCCA GGTAAATGAG
GCTGCCTATT TAAACGGACT GGAAGAAATG CCCATAGAAA ATATCAGTTT TAATGACATC
AATATGGAGG CAAAAACAGG TTTAGACATC AGGAATGCCA GCCGTATCGC ATTCCATAAC
GTAGAGGTAA ATACAGAAAT AGGACCGGCT GTTAAAGCTG AAAATGTTTC TGCACTGACT
ATAAACGGTT TAAAAAGTTA TACACCACAT GCAAATGCAG CTGTAATTAC GCTTAAAGAT
ATAAATGATG CCTTTATTTA CAACGCTTTC CCGGCTGCAG GAACAGATAT GTACCTGAAA
ATCAGTGGAG AAAAAACTAA AAATATCACG CTGGGAAACA ATAACTTTAA GCATGTAAAA
ACTCCTGTGG TAACGGAAGG GAAAGTTACA GACGCAGTAC GGGTTATTTC GGGGGATACC
ATTAAATAA
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| Protein sequence | MIIKKIAEMK FYSPCPVFKI IVVLFTCLLS FGLSSNAQSY YNVLKYGARN DSSKLATQAI
KKAIDAASKA GGGTVYFPAG KYLTGAIHLK SNITIFIDAG AELHFSDNFD DYLPMVKSRY
EGVDVTSFSP LFYAYKAENI AITGRGIIDG HGKKWWDFVE GYKADQPRSK WQYMFDDLNR
EILLPDDPKQ MKRGFLRPPF IQTMYCKNVF IEGITIRNSP FWTVNPEFCE NVTIHAVTIN
NPGSFAPNTD GINPESCNNV HISNCHISVG DDCITIKSGK DAPGRKMAAP AQNYTITNCT
MLSGHGGVVI GSEMSGDVRK ISISNCVFDG TDRGIRIKSA RGRGGIVEEI RVDNIIMKNI
KQQAIVLDLQ YAKTTLEPVS ERTPRFRNIH FSNITGQVNE AAYLNGLEEM PIENISFNDI
NMEAKTGLDI RNASRIAFHN VEVNTEIGPA VKAENVSALT INGLKSYTPH ANAAVITLKD
INDAFIYNAF PAAGTDMYLK ISGEKTKNIT LGNNNFKHVK TPVVTEGKVT DAVRVISGDT
IK
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