| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2817 |
|---|
| Symbol | |
|---|
| ID | 8253925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3339342 |
|---|
| End bp | 3342164 |
|---|
| Gene Length | 2823 bp |
|---|
| Protein Length | 940 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644936463 |
|---|
| Product | Alpha-L-fucosidase |
|---|
| Protein accession | YP_003093078 |
|---|
| Protein GI | 255532706 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCATC TGTTAAAAAA CCAGATATCC GCAGTATTGC TGGCGGGTTT TGGTATAACC
AGTTTTACAG CCCTTGCCCA GCAACCTGCT TACCAGCTCT GGTACACTAA ACCTGCGGAA
AAATGGACGG ATGCCCTTCC AATCGGGAAT GGTCGTTTGG GTGCCATGAT TTTTGCAGGG
GTAGAAAAAG ATCACATTCA GTTTAACGAA GAGACTTTAT GGACGGGCGG TCCAAGAGAT
TATAACCATA AAGGTGCTGC AGCTTACCTG CCGCAGATCA GGCAATTGCT TTTTGAAGGT
AACCAGCAGG AGGCCGAAAA GCTGGCTGCT GAGAAATTTA TGGGCAGCAT GAGTGGGGCG
GGCGACCGGA CCAAATGGGT TGGCGACATG AAGGCTTTAA AGGGATTGCA AGGCAATCCG
GCGCTTGAAA ACTACGACGA TCAATCCTGG AAAAGCATTA AGGTACCCAG TTATGAAGGC
TGGGAAGCTG TGGGACTCTC GGGCCTGGAT GGGGCAGTAT GGTTCCGCAC GACGTTCGAG
GCTCCGCCCA ACTGGCAGGG CAAAGACCTG GTGCTCGACC TGAACCGTAT CCGTGATCAG
GACCTGACTT ATGTAAATGG TACCCTGATC GGCAATACCG ATGGTACCGA ACCCAGAAAG
TATACCATAC CGGCCAAACT GCTTAAACCT GGAAAAAATA CCATTGCTAT ACAGGTACTC
AATTATTTTG ATAAAGGTGG ACTGGCAGGT TATAAAGATA CAAGCAAAGC CATTGCGGTC
TATCCGAAGG ATGCACCGGG AAATGGAGTG TCGCTGGTTA AAGAATGGAA ATATAAGGTG
CAGAATGATG AACCGCCGCT GGTTCCTCAG TTTCAGGCCA GTTACCAGCC ATTTGGCGAC
CTGTACCTGA ACTTTAAAAC CGAAAATGAA GCGGTTACAA ATTATAAAAG GAAACTGGAC
CTGAACACAG CAGTTGCCAG TACCACCTAC ACCTTAAAGG GCATAAACTA TCTGCGGGAA
TATCTTGCTT CGCAACCCGA TCAGGCAATT GTGATACGTT TAACGGCCGA TAAAAAAGGA
AGCATCAGTT TTGATGCCCT TTTGGGAAGT CCGCATAAGT ACTCAGGAGT TAAGAAAATA
AATGCCAATA CCATTGCACT TTCTTTAAAG GTGAGGGATG GCGTGCTAAA GGGCGAAAGC
CGCCTGCAAG CCATCATTAC TAAAGGAAAG TTACTGGTTA CGGCCAATAA GATCAGTATT
GTTGCTGCGG ATGCCGTAAC ACTTTACCTT ACGGCCGGTA CCAGCTTTGT AAACGACAAA
GATGTTTCGG GCAATCCAGC CAGTGCAGCT GTTAAAGCAC TGACCGGCTT AAATGGAAAG
AGCTATGCCC AGGTTAAAGC GGCACACATC AAAGAATACC AGAAATACTA TACTGCTTTT
TCAGTCAGTT TTGGGCCCGA CAGTAAAGCA AGCTTGCCAA CAGACGAACG GATAGAACAG
TTTTCGGACG GGAATGACCC CGCTTTTGCC GCCTTATTTA TGCAATATGG CAGGTACCTG
TTAATTTCCA GTTCCCGGCC GGGAACGCAG CCCGCAAACC TGCAGGGCAT CTGGAATGAG
CTGCTTACCC CACCATGGGG CAGTAAATAT ACCACCAACA TTAACCTCGA AATGAATTAC
TGGCCAACGG GGGTATTGAA CCTGTCTGCA ATGGCCGAAC CCCTGATCCG GAAAATAAAT
GCGCTGGCAA AAAACGGGGA AGTAACAGCT AAAGTGCATT ACAATGCTAA GGGTTGGGTA
TTGCACCACA ATACAGACCT CTGGAATGGT ACAGCCCCTA TTAATGCCTC AAATCATGGG
ATATGGGTGT CTGGCGCAGG ATGGCTCAGT CAGCACCTAT GGGAACATTA CCTTTTCACA
CAGGACCTAA ATTTCCTTAA AAATGAAGCC TATCCGGTAA TGAAACAGGC AGCCGTTTTC
TTTAACGACT TTTTAATTAA AGATCCCAAA ACAGGCTGGC TGATCAGTAC ACCATCTAAT
TCTCCTGAAA ATGGGGGACT CGTAGCCGGG CCCACTATGG ACCATCAGAT CATCCGTACC
CTCTTTAGGA ACTGCATTGC TGCAACAGCG CTTTTGGGCG TTGATGCTGA TTTTAAAAAA
ACACTGGAGC AAAAAATAAC GTTGATAGCA CCAAATCAGA TTGGTAAATA TGGTCAGCTA
CAGGAATGGC TGGAAGATAA AGATGATACC ACCAATAAAC ACCGCCATGT TTCGCATTTA
TGGGGCGTAC ATCCGGGCAA TGACATTACC TGGGATACAC CCGACATGAT GAAGGCAGCC
AGGCAGTCGT TAATTTACCG TGGCGATGAA GGTACAGGCT GGAGCCTGGC CTGGAAAATC
AATTTCTGGG CACGGTTTAA GGACGGTAAC CATGCCATGA AAATGGTTAA AATGCTGATC
AGCCCCGCGG CAAAGGGTGG TGGAGCTTAC ATCAACCTGT TTGATGCACA CCCACCTTTC
CAGATTGACG GCAATTTTGG GGGAGCCGCA GGCATTGCAG AAATGCTGCT GCAAAGCCAT
ACCCAGTTTG TGGAACTGTT GCCGGCCTTA CCAGCAGATT TGCCGGAAGG TGAGGTAAAA
GGAATTTGTG CACGCGGGGG CTTTGTATTG AACTTTAAAT GGAAAGATGG TGCATTAAGC
GCAGTCGAGG TCTATTCAAA AACAGGTGGT GTTTGTTTAC TGCGCTACGG AAATAAGATT
ACCAGTATTG CCACTCAGCG AGGGGCAAGC TATAAATTTA ACGGAGATTT AGAGAAATTA
TGA
|
|---|
| Protein sequence | MIHLLKNQIS AVLLAGFGIT SFTALAQQPA YQLWYTKPAE KWTDALPIGN GRLGAMIFAG
VEKDHIQFNE ETLWTGGPRD YNHKGAAAYL PQIRQLLFEG NQQEAEKLAA EKFMGSMSGA
GDRTKWVGDM KALKGLQGNP ALENYDDQSW KSIKVPSYEG WEAVGLSGLD GAVWFRTTFE
APPNWQGKDL VLDLNRIRDQ DLTYVNGTLI GNTDGTEPRK YTIPAKLLKP GKNTIAIQVL
NYFDKGGLAG YKDTSKAIAV YPKDAPGNGV SLVKEWKYKV QNDEPPLVPQ FQASYQPFGD
LYLNFKTENE AVTNYKRKLD LNTAVASTTY TLKGINYLRE YLASQPDQAI VIRLTADKKG
SISFDALLGS PHKYSGVKKI NANTIALSLK VRDGVLKGES RLQAIITKGK LLVTANKISI
VAADAVTLYL TAGTSFVNDK DVSGNPASAA VKALTGLNGK SYAQVKAAHI KEYQKYYTAF
SVSFGPDSKA SLPTDERIEQ FSDGNDPAFA ALFMQYGRYL LISSSRPGTQ PANLQGIWNE
LLTPPWGSKY TTNINLEMNY WPTGVLNLSA MAEPLIRKIN ALAKNGEVTA KVHYNAKGWV
LHHNTDLWNG TAPINASNHG IWVSGAGWLS QHLWEHYLFT QDLNFLKNEA YPVMKQAAVF
FNDFLIKDPK TGWLISTPSN SPENGGLVAG PTMDHQIIRT LFRNCIAATA LLGVDADFKK
TLEQKITLIA PNQIGKYGQL QEWLEDKDDT TNKHRHVSHL WGVHPGNDIT WDTPDMMKAA
RQSLIYRGDE GTGWSLAWKI NFWARFKDGN HAMKMVKMLI SPAAKGGGAY INLFDAHPPF
QIDGNFGGAA GIAEMLLQSH TQFVELLPAL PADLPEGEVK GICARGGFVL NFKWKDGALS
AVEVYSKTGG VCLLRYGNKI TSIATQRGAS YKFNGDLEKL
|
|---|
| |