| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2784 |
|---|
| Symbol | |
|---|
| ID | 8253892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3290645 |
|---|
| End bp | 3292492 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644936430 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003093045 |
|---|
| Protein GI | 255532673 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00400401 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATGA GAAGATATAA AATTTGGTTA ACCCCCGTAC TTTTGATACT GGTACAAGCA
GCACAAGCAC AAGATACCTT ACGTTATACC GGCAGTGTCA TGGTTAATGC CGACTATCAC
CACGGTCAGC TTGTGCCTGC GATGGGGGTA CACAACATCC AGACTTTCAG GGCCAACCGG
GAACATCCTG AACTGGCTGA GGGACTAAAC TGGACTTATA ACCATGCACC CATGCTGGCC
TGGTGGAATG GTACTTTTTA CCTGGAATAC CTGAGCGATC CTGTGGGTGA GCATATCCCG
CCCAGCAGAA CACTGTTGCA AACCTCTAAA GATGGTTACA AATGGTCTAA GCCGGACATT
GTTTTTCCGC CCTATAAAAT TCCCGATGGC TGGAAAAAAG ATGGCTATCC TGGTGTAGCT
AAAGATTTAT ATGCCACCAT GCACCAACGC GTTGGTTTTT ATGTATCCCA GTCCGGACGC
CTGTTCCTGC TGGCTTATTA TGGTATAGCT ATGGATAAAA AAGACGATCC GAATGATGGA
AAAGGCATCG GGCGCGTCAT CAGGGAGATC AGGAAAGACA ATACTTATGG TCCTATATAT
TTCCTCAGGC CGAATTCCAG CTGGGATATG AAGCATGCGG CATATCCGAT GTATAGCAGC
AGTAAGGATA AAGATTTCGT AAAGGCATGC AATGAAATTC TGGCCAGTCC CTTAATGATG
CAGCAAATGG TAGAAGAGGC CGATAGAAAT GATCCTCTAA TTCCATTGAA CAGACCAGTA
AAGGCATTCA GTTATTACCA CCTGCAGGAT GGAAGGGTAG TGGGGTTATG GAAACATGCG
CTAACATCCA TCAGCAAGGA CAATGGCAAG AGCTGGCAAT ATAATCCGCT GCGTGCACCT
GGAGTAGTAA ACAGCAATGC CAAAATATGG GGTCAGCGTA CCTCAGACGG CCGTTTTTCC
ATAGTATACA ACCCTTCAGA ATTCCGCTGG CCACTGGCCG TTTCTACCAG TGATGACGGC
TTAGATTACA AAGACCTTTT GCTGGTTAAT GGCGAAATTT CTACCATGCG CTATGGTGGT
AATTACAAAT CCTATGGTCC GCAGTATATC CGTGGGATCC CGGAAACTGA TGGTAAGCCA
GCTGATGGCA ATATGTGGCT TACTTATAGC ATGAACAAAG AAGACATCTG GATCGCCAAA
GTACCGGTAC CTGTAATTTC CAGTACTAAA ACGCCGGTCG ATGAAGTGTT TAATTCCCTT
CCCGACGGGC AGGAACTTAA GTTATGGAAC ATTTTTAGTC CGCTTTGGGC CCCGGTTCGA
ATAGAAAAGA CACCCGACGG TACTAAGGCA CTCACCTTGC GCGATAAAGA TCCATACGAT
TATGCCAAAG CGGAACGGTT GATCCCGGAA GCAAAAAAAG TAAAAGTAGA ATTTTCAGTA
AGCCCGGCCC AGAACAATAC CGGGTCATTG CAGATTGAAT TTCAGGATGC CAGAGGTACA
GCAGCGGCCA GGTTAATATT TGATGCCGAT GGTGCCTTAA AAGCCAAGGT GGGTTACCGG
AATTCTGAGG TCATGAAATA CGAAGCAGGG AAAACATACC AGGTCAGGAT AGAGCTGGAC
CGTGACAAAA GGATGTACGA CATCTTTGTA AATGGCCAAA GTAAAGGAAC AAGGCTGATG
TTTGTACCTG TAGCATCATT TGAAAAAATT ACCTTCAGAA CAGGTGATAT ACGCCGGTTT
CCGGATGTAG ATACACCAAC AGATCAGGAT TTCGATCTTA AAAATGCTGG CACACCAGTG
AAAGAAGCCG TATATTACGT CAAATCATTA AGAACAACAG CATTTTAA
|
|---|
| Protein sequence | MPMRRYKIWL TPVLLILVQA AQAQDTLRYT GSVMVNADYH HGQLVPAMGV HNIQTFRANR
EHPELAEGLN WTYNHAPMLA WWNGTFYLEY LSDPVGEHIP PSRTLLQTSK DGYKWSKPDI
VFPPYKIPDG WKKDGYPGVA KDLYATMHQR VGFYVSQSGR LFLLAYYGIA MDKKDDPNDG
KGIGRVIREI RKDNTYGPIY FLRPNSSWDM KHAAYPMYSS SKDKDFVKAC NEILASPLMM
QQMVEEADRN DPLIPLNRPV KAFSYYHLQD GRVVGLWKHA LTSISKDNGK SWQYNPLRAP
GVVNSNAKIW GQRTSDGRFS IVYNPSEFRW PLAVSTSDDG LDYKDLLLVN GEISTMRYGG
NYKSYGPQYI RGIPETDGKP ADGNMWLTYS MNKEDIWIAK VPVPVISSTK TPVDEVFNSL
PDGQELKLWN IFSPLWAPVR IEKTPDGTKA LTLRDKDPYD YAKAERLIPE AKKVKVEFSV
SPAQNNTGSL QIEFQDARGT AAARLIFDAD GALKAKVGYR NSEVMKYEAG KTYQVRIELD
RDKRMYDIFV NGQSKGTRLM FVPVASFEKI TFRTGDIRRF PDVDTPTDQD FDLKNAGTPV
KEAVYYVKSL RTTAF
|
|---|
| |