| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2721 |
|---|
| Symbol | |
|---|
| ID | 8253829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3207159 |
|---|
| End bp | 3208811 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644936369 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003092984 |
|---|
| Protein GI | 255532612 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0628838 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.846389 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT TACATAAGAA TATACTTTCC TGCTTTCTGG CTTTGGCAGG AATATTTAGC
CTGGCCTCCT GCGAAAAGGA ACTGGATAAA ACGCCGGAAT CCCAGTTGTC GGATGCCGAT
TTCTGGAACA ATACCGAAGA CCTTAAGCTG GCTGCAAATT ATTTTTATTC CTATCTTCCG
GTCATTCAGG ATAACATCAA CGCCAACTGG TCTGACGACG GCTTTGCCAA TGGCGGAGCG
AATGCCATAA GTGATGGGTC GCGTACAGTA CCTGCTACTT CGACCGACTG GTCGGATAAT
TATAAGCTGA TCTATAACTG CAATAACCTG CTGGAAAAAT CTGTGCGGGT AAAGGGCGAC
CAGAAACTTA TAGACCGTTA CCGGGCAGAG GCAAGTTTTT TCAGGGCTTT TGCTTATGCT
AACCTGGTTA AGCGCTTTGG GGATGTACCG CTCATTCTTC GTACCTTTGA TGTATCCGAC
ACGCTGAACC AGGCACATCG GACCCCACGT CAGGCTGTGG TAGATGTTAT TTATACTGAT
CTGGACTTTG CCGCGGCTAA TCTGCCTGCT TCTTCTGCTT TGCCTGCTGC CGAATACGGT
CGCATCACCT CGGGGGCTGC TCTGTCGCTT AAAGCCCGGG TTGCCTTGCA TGAGGGTACG
TTAAAAAAGT TTCATGGAAA AGGTGATCCG GCAAAGGATC TTGGGATCGC AGTTACTGCT
TCTGAAACTG TAATGAAGTC TGGTCTGTAC AGCATCTTTC GCTATGCAGC CAAGCCCGAC
AGTAGTTTTT ATTACCTGTT CCAGCCCGCA AACGAGGCCC CGGTAAACAA AGAAGCCATA
CTGGTGCGCC TGTACGGAGA AAATCTTGCC AATCCCATTG CTTTTCACAA TTTTCCGGCC
GAATTGGGCG CAGGCAGTAA CACTACGCCT ACCAAAGCCC TTATGGATGC TTATCTATAT
ACAGACGGGT TACCACAAGG TAAATCGCCC CTGCAGAAAA CCGAGACCAC TACACTTACC
CAGTTCGAGA ACCGCGATCC GCGCATGGGC ATGACGGTAT TCAATAAAAC ACATTATTAT
GTGACCAGCT TTTACCTTCC TACGCTTACT TTTGCACCTA CCGGCTATAA GGTCCGTAAA
TATTTCAACA CTGTCGATTT TATTGCCAAA CGGTCATTCG TAGACAATAT GACCATCCGC
TACGCAGAAA TATTGCTGAT CTATGCAGAA GCTAAGTTTG AATTGAACGG AAGTATTTCA
GACGATGATC TGAACAAGAG TATCAACCTG ATCCGCAGCC GTGCAAAAAT GCCTGCACTC
ACCAATGCCT TTGTAACTGC TAATGGCCTC GACATGCGGA ACGAGATCCG GCGCGAACGG
AGAATTGAGC TTGCAGTGGA AGGCCAGCAC CGGTATTGGG ACCTGATCCG TTGGAAAACC
GCAGAGATCG AACTTCCTAA ATTGATCCTC GGCGCCCGTT TTTTTGCAAA CGAGTTTGAG
AAGGCAACAC CCAAGCTGGA TGCCCAGGGA TACATTATTG TACAGGAAGC AGCCAAACGT
AAATTTAATC CGGAGCGGGA TTATCTATGG CCCCTGCCAA CGCGCGACCT TGGTTTGAAC
CTGAGCCTTA CTCAGAATCC ACGCTGGCAG TAA
|
|---|
| Protein sequence | MKSLHKNILS CFLALAGIFS LASCEKELDK TPESQLSDAD FWNNTEDLKL AANYFYSYLP
VIQDNINANW SDDGFANGGA NAISDGSRTV PATSTDWSDN YKLIYNCNNL LEKSVRVKGD
QKLIDRYRAE ASFFRAFAYA NLVKRFGDVP LILRTFDVSD TLNQAHRTPR QAVVDVIYTD
LDFAAANLPA SSALPAAEYG RITSGAALSL KARVALHEGT LKKFHGKGDP AKDLGIAVTA
SETVMKSGLY SIFRYAAKPD SSFYYLFQPA NEAPVNKEAI LVRLYGENLA NPIAFHNFPA
ELGAGSNTTP TKALMDAYLY TDGLPQGKSP LQKTETTTLT QFENRDPRMG MTVFNKTHYY
VTSFYLPTLT FAPTGYKVRK YFNTVDFIAK RSFVDNMTIR YAEILLIYAE AKFELNGSIS
DDDLNKSINL IRSRAKMPAL TNAFVTANGL DMRNEIRRER RIELAVEGQH RYWDLIRWKT
AEIELPKLIL GARFFANEFE KATPKLDAQG YIIVQEAAKR KFNPERDYLW PLPTRDLGLN
LSLTQNPRWQ
|
|---|
| |