| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2710 |
|---|
| Symbol | |
|---|
| ID | 8253818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3185349 |
|---|
| End bp | 3188732 |
|---|
| Gene Length | 3384 bp |
|---|
| Protein Length | 1127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644936358 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003092973 |
|---|
| Protein GI | 255532601 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.302213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.762273 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA CAATAATTTT ATTGGTCACG GTCTTTTTGC AGCTCGCACA GGCTACTAAA
GCCCAGCGCA TCACTTTTTC ACAAAAAAAT GCCAGTCTGG AACAGGTGTT TAAAGAGATC
CGGAAACAAA GCGGTTACGA TTTCTTCTAC GATCTGGAAG ACATCAAGAA AGCAAAAAGA
GTAGATCTTT CGGTAAACAA CGAAACCCTC GAAGAGGTCC TGAACCGCTG TTTTGAAGAT
CAGCCCTTCA CGTTTATGGT TAAGGACAGA ACAGTGATCA TTAAAGAAAG GCGACAGCCC
AAAACTACCG GTATTGCAGC TGTTGTTCAA AAGGTAGACA TCAAAGGAAA AGTTACCGAT
CAGAACGGTG GCCCGCTGCC AGGTGTAAGC ATTAAGCTGA AAGGGTCAAA CCTGGGCACC
ATGAGCGATA GCAATGGTAA CTATGCCTTG TCCTTACCCG AGGGAACGGG TACCCTGGTA
TTCAGCTTCA TTGGTTTTGC GCAACAGGAA ATCGCTGTAA ATGGCCAAAG TACCATTAAT
GTAGTGTTAA AGGAGGAAGA CAAAGCGCTT ACAGAAGTGG TAGTGGTTGG TTATGGTACA
CAAAAGAAAG TGAACCTTAC CGGCGCGGTA AGCAATGTTT CTGGTACCGA GCTTACCACC
AGGCAGGCAC CCAATACCAC TTCATTGCTG CAGGGCAGGA TGCCGGGCGT GCAGGTAACC
CAAAACTCCG GACAGCCGGG GGCCGAGGCA GCCAGTATAC GCATCCGCGG CCAGGGAACA
TTTAGTGCTG CCGGAAATAA TCCGCTTATT TTAATAGATG GGATAGAAGG AAACCTGAAC
AATGTAAACC CTAACCAGAT TGAAAGTGTA TCCGTATTGA AAGATGCAGC TTCAGCTGCC
ATTTACGGAT CAAGGGCGGC AAATGGGGTA ATCCTGGTAA CCACCAAGTT TGGCAAGGCA
GGAAGGCTAA ATGTAGATTA CAGTTACAAT TTCAGTAGTC AGCGTGCCAC TTCTATGTAC
GACAGGATTA CCAATTCAGT AGAGTTCATG GAATTGCTGA ACAAGGCCAT TGCACATACC
AACACCAGTG CCAACCAGAT TTATAAACCT GAAGAGATTG AGGCATACCG TCAGGGTGCC
TTAACCAATC CGGCACAATA TCCAAGCTAC GACTGGATGA ATGCCATTTT CCGCACCGCA
CCCATGCAAC AGCATTACCT GAGTGTTAAC GGAGGTAAAG AAGGTACCAC CTATAATTTC
GGTGCGGGTT ATCTTGACCA GGATGGTATC CTCATTGCCA CAGGTTACAA AAGATATGAT
GCACAGTTCA ACTTCAAAAC CAGCCTGAAC AACAAGGTTA CTTTTGGAAC CAACCTGGCC
TTTTCAAAAG GCGATAGGAA CGAAACGGCT TTAAATGGAA ATTTTGATGG CAATTCAACA
GAAGATCAGA TACTGAGTGC CCTTGCTGCG CATCCAACTT TTACCCCTAA ATTGCCTGAT
GGCAGTGGAA GGTATGCTGC AAAGGCGTTG ATCCAGGAAG GAGGGAATAA AAATCCCGTG
GCTATGGCCG AAAACGGTGG CAGGTACATC AAAAACTATT ACACGCTGGC ATCTGCATTT
TTGAATGTAG ACATTTTACC GGGCCTGAAA GGCGAGATCA AAGGCGCGGT AAAATACAAT
GATATGCAGA GCAAAGTACA TGTGGTTGGT GTACCCGGAT ACCTGTTCCT GCCCGATGCT
GGTGGACAAT ATGCGTTTAA TACCCAATGG AATGGAACAG TAGGCGAGAA CAACCTGACC
GTTCGCAACG AAAAGGATGT ACAATACACT TTGTTCGGAA CATTGAATTA TACGAAGACC
TTTAATGAGG TACACAATTT CTCGGCATTG CTGGGTGCAA GTCAGGAAAC TTTCCGTTAC
GACCGCATAC AGGGCTTTAG AAGAAACGCA CCGGCAGATA ATATCCTGGA GCTGAGTGGT
TATTCGCCAG GCGGGCCACT TGCTGAGGGC TTTGCCTATC AATGGGCATT ACAGTCGCTT
TTTGGAAGGG TAAACTACAA CTACAAAGAG AAATATCTGC TGGAAGGTAA TTTCCGTTAC
GATGGTTCTT CACGTTTTCC TACAGGCAAT AAATGGGGAT TCTTCCCTTC GGCTTCAGCA
GGATGGAGAA TAAAGCAGGA AGATTTTATG AAATCTGTAG ATTGGATTAG CGACCTGAAA
GCCCGTGTAT CATGGGGCCA GGTGGGTAAC CAAAATGTCA ACCGTACACT TTCAGGCGAA
TCGATGCCTT ATCCATATCA GGATGTGCTG AACCCTGTGT CGTATAGTAT TGGGGGTGCA
CTGCAGCAGG GGGTAACACA GACCGACCTC ATCAACAGGG ATATTACCTG GGAAACGACC
ACTGTAACTG ATATTGGTCT CGATTTCAGT TTGTTCAATT CCAGGGTATT CGGGAGTGTA
GACTGGTATT CCAAAAACAC TACCAATATT TTAAGGTCAT TGCAGGTGCC GGATTTTATT
GGTATTGCAG GGCCAACGGT AAACCTTGGC GAAATGAACA ATAGAGGCCT AGAACTCTCA
TTGGGCTATG AGAACAAGAG CAACAATTTC CACTACAAAG TGCAGGGTAA TTTTGAGACC
TACAAAAATA AACTGGTCAA ATTTGGTTCC CGTGAAATAG ACAATGGAAA CGGGTATATC
AGACAGGAAG GGCTGCCCTA TAATTCTTAT TATATGTATG TGTTTGATGG CATTTATCAA
AACCAGGCCG AGATCACTAA CGGACCTACC CCTTTGGTAA CCCCAAAACC GGGTGACATG
AAGTATAAGG ACGTGAGCGG GCCTAATGGT GTACCTGATG GTAAAATTAC TACAGACGAC
CGCATAGTGG TTGGTGGTGC TTTTCCTAAG TTCAACTATG GTTTTACTTT TAATGCAGAT
TATAAAAACT TTGACTTGAG TTTATTCATG CAGGGGGTAC AAGGCCGTAA GATCTATATC
AAAGAATGGG GAATTGCGCC TTTCAGACAG GCCAGTCCAC CACCTACTTT CTGGAGGGAT
GCCTGGGATG GCGAGGGTAC TTCTAATACC ATACCACATA TCTTTAATGA GAATTACGGG
CCAAATACGC AGGTATCTGA CTGGTGGTTA CAGGATGCTT CCTACCTTAG GTTAAAAAAC
CTGCAGCTGG GTTATACTTT CTCCAGCAAA GTGTTAAGTA AAATTAAGGT GCAGGGGCTA
AGGCTATATG TTTCGGGCGA TAACCTGCTT ACTTTTACTA ATTTCTTCAA GGGAATTGAT
CCGGAGCGTG CCGCTGCCAA TGGCAGGGCC GCCATTTATC CTCAGGCCAA AATTTATTCA
TTTGGCCTTA AAGTAACCCT TTAA
|
|---|
| Protein sequence | MKFTIILLVT VFLQLAQATK AQRITFSQKN ASLEQVFKEI RKQSGYDFFY DLEDIKKAKR
VDLSVNNETL EEVLNRCFED QPFTFMVKDR TVIIKERRQP KTTGIAAVVQ KVDIKGKVTD
QNGGPLPGVS IKLKGSNLGT MSDSNGNYAL SLPEGTGTLV FSFIGFAQQE IAVNGQSTIN
VVLKEEDKAL TEVVVVGYGT QKKVNLTGAV SNVSGTELTT RQAPNTTSLL QGRMPGVQVT
QNSGQPGAEA ASIRIRGQGT FSAAGNNPLI LIDGIEGNLN NVNPNQIESV SVLKDAASAA
IYGSRAANGV ILVTTKFGKA GRLNVDYSYN FSSQRATSMY DRITNSVEFM ELLNKAIAHT
NTSANQIYKP EEIEAYRQGA LTNPAQYPSY DWMNAIFRTA PMQQHYLSVN GGKEGTTYNF
GAGYLDQDGI LIATGYKRYD AQFNFKTSLN NKVTFGTNLA FSKGDRNETA LNGNFDGNST
EDQILSALAA HPTFTPKLPD GSGRYAAKAL IQEGGNKNPV AMAENGGRYI KNYYTLASAF
LNVDILPGLK GEIKGAVKYN DMQSKVHVVG VPGYLFLPDA GGQYAFNTQW NGTVGENNLT
VRNEKDVQYT LFGTLNYTKT FNEVHNFSAL LGASQETFRY DRIQGFRRNA PADNILELSG
YSPGGPLAEG FAYQWALQSL FGRVNYNYKE KYLLEGNFRY DGSSRFPTGN KWGFFPSASA
GWRIKQEDFM KSVDWISDLK ARVSWGQVGN QNVNRTLSGE SMPYPYQDVL NPVSYSIGGA
LQQGVTQTDL INRDITWETT TVTDIGLDFS LFNSRVFGSV DWYSKNTTNI LRSLQVPDFI
GIAGPTVNLG EMNNRGLELS LGYENKSNNF HYKVQGNFET YKNKLVKFGS REIDNGNGYI
RQEGLPYNSY YMYVFDGIYQ NQAEITNGPT PLVTPKPGDM KYKDVSGPNG VPDGKITTDD
RIVVGGAFPK FNYGFTFNAD YKNFDLSLFM QGVQGRKIYI KEWGIAPFRQ ASPPPTFWRD
AWDGEGTSNT IPHIFNENYG PNTQVSDWWL QDASYLRLKN LQLGYTFSSK VLSKIKVQGL
RLYVSGDNLL TFTNFFKGID PERAAANGRA AIYPQAKIYS FGLKVTL
|
|---|
| |