| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2705 |
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| Symbol | |
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| ID | 8253813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3178700 |
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| End bp | 3179188 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 644936353 |
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| Product | PilT protein domain protein |
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| Protein accession | YP_003092968 |
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| Protein GI | 255532596 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1569] Predicted nucleic acid-binding protein, contains PIN domain |
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| TIGRFAM ID | [TIGR00305] probable toxin-antitoxin system toxin component, PIN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000855121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.254585 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTAGAGG CTAGGTATTT TGTATTTGAT ACAAATGCAT TGATTAGTGC ACATCTGATT
CCTGGATCTG TGAGTTTTAA AGCATTTGAC CTGGCATTAA AAAATGGTAC TATTGTAAGT
TCTGTTGAAA CGTGGTATGA ATTCTCAACC CGTTTTATTC GTCCAAAGTT TAATAGCTAC
TTAACAATAG AAAAACGGGA GTTTTATATC CTAATGTTAA AAAACAGAAC AGAGTTTGTT
GACGTAAAAA AACAAGTTAC GATTTGTAAG GATCCAGATG ATGATAAATT TCTTGGTCTT
GCTGTTGCTG CGGATGTTGC CTGTATCGTC TCCGGTGATA AGGATTTATT AATTTTGAAT
CCTTATGAGA ACATTCCAAT ATTAACGCCG GTACAGTTTT TAACTTATTT TGCCGAGTTG
GATGATTCAT TTATTGTTAA TGAGCCAAAT GTATATTATG GAAATATGAG CAATGCTGCT
CAATTTTAG
|
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| Protein sequence | MLEARYFVFD TNALISAHLI PGSVSFKAFD LALKNGTIVS SVETWYEFST RFIRPKFNSY
LTIEKREFYI LMLKNRTEFV DVKKQVTICK DPDDDKFLGL AVAADVACIV SGDKDLLILN
PYENIPILTP VQFLTYFAEL DDSFIVNEPN VYYGNMSNAA QF
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