Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2703 |
Symbol | |
ID | 8253811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3175708 |
End bp | 3177498 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644936351 |
Product | Alpha-L-fucosidase |
Protein accession | YP_003092966 |
Protein GI | 255532594 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3669] Alpha-L-fucosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.487466 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAACGA CTAATTATTT TCTTACAATT GTACTTTTTT TTGCCTGCAC CCTTTCCATT CATGCGCAAA CCATGGATGA AATGTGGGAC AGCAGTGTAT CCGGTAAAGC AAACCCCAAT TTAAAATGGT TTAAGGAAGC AAAGTTTGGC ATGTTTATCC ACTGGGGGCT GTATGCAAAA CTTGCCGGTG AGTGGAAAGG CAAACGCTAT TATGGCAGTG GGGAGTGGAT CATGAGCCAG GCCAGAATAC CGGTTGCTGA GTACAAAGAA GTAGCCAAAA CTTTTAATCC CATTAAGTTT AATGCGGATG AATGGGCGCA GCTGGCTAAA GATGCAGGGA TCAAATACAT GGTAATTACT GCCAAACACC ATGAAGGCTT TTCTATGTTT GATACTAAGG TGAGCGATTT TGACATTGTG GATGCTACAC CTTATAAAAA AGACCCGATG AAAGCCTTAG CCGAAGCTAC CAGGAAAAGG GGCATTCAGT TTGGGTTTTA CTATTCACAG TTCCAGGATT GGTATGAGCC AAATGGTGGA AAAAACAGCT GGGATTTTGA CGAGACGAAA AAAGATTACC AGAAATATTA CAGGGAAAAA GCCATACCCC AGTTAAAAGA GCTGCTTGGC AATTATGGTC CTTTGGGAAT TGTATGGTTT GATACTCCCG GGGGCATGAC CAAAGAACAG ACCCTGAACT TTGTAAATGA CTTAAGGGTA TTGCAGCCAA AAAGCCTGTT TAGCAGTCGC GTTGGCCATG GTCTGGGCGA TTACAGGGAT TTTGGCGATT CGGAAGTGCC AGACACGCCG ATAAAAGGGG CCTGGGAATC TATTTATACG CACAACGATT CATGGGGCTA TATTAAACAT GATATGAATT TTAAAACCCC TGCAGAAATT ATCAGGCTGC TGGCCAATGT AGCTTCAAAA GGTGGTAACC TGATGCTGAA CGTAGGGCCC GACGGGGAAG GCAATATTCC CGAATATTCG GTAAAGTTTT TAAAGGAAAC GGGTAAATGG CTGGATAAAA ACGGAGAAAG TATTTACGGC AGTACCTATG GCCTGATCCC GGCACAGCCC TGGGGGGTAA GTACCTCTAA ACCGGGTAAG CAGTACTTAC ATGTCATGCG CAGGCCTTTG GATGGGAAAC TGTTGATACC TGATTTTAAA GGTAAAGTTG CAAAAGTCTA TAACCTCGTT AGCCAGCAAC AACTGAGTTG GAAAAATACA GGTAAAGATA TATGGATCGA TTTGCCTGTT TTTGAGGCAG ATGCTGCAAA TACGGTGGTT GTGGTAGAAT ATTCGGGTAA AATTGACGAT TATGACCTGA AGGTGCCCAT TACGGTTTCC GGTCAGTACC CCGAAAATAT AGTGGGGGCC ACTTATGCCA GACTAAAGGG GAATGCGAAG ATCCAGAGTT TAACCTATAG CCATTATTAT GGCGACTGGA AGCATACCGT TTGCGTAACA GATATCAAAA GCAACAATGA CGAAGCTGAT TTTGCCATTC GTGTTACCGA ACCCGGGGTT TATAAAATTG CGCTGGAATA TTCCTGTGCA CCCGAAAGTG CCAAACAGGA GGGTAGCATG ACGGTAAATG GCCAGGAGTT TCTGTTCCGT ACATTGAGGA CCTCAGATTT TGATAAAAAA GCACCTTTGC CATTTATTAA ACATGTGATA GCCACCACTA CTTTCAGTAA AGCTGCTGAT TACCAGATCA GCATCCGGCC TTTGCAAAAT GGAATTGAGT TATTTAAGTT AAAATCAGTT ATATTGGAAC CTGTAAAATA A
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Protein sequence | MRTTNYFLTI VLFFACTLSI HAQTMDEMWD SSVSGKANPN LKWFKEAKFG MFIHWGLYAK LAGEWKGKRY YGSGEWIMSQ ARIPVAEYKE VAKTFNPIKF NADEWAQLAK DAGIKYMVIT AKHHEGFSMF DTKVSDFDIV DATPYKKDPM KALAEATRKR GIQFGFYYSQ FQDWYEPNGG KNSWDFDETK KDYQKYYREK AIPQLKELLG NYGPLGIVWF DTPGGMTKEQ TLNFVNDLRV LQPKSLFSSR VGHGLGDYRD FGDSEVPDTP IKGAWESIYT HNDSWGYIKH DMNFKTPAEI IRLLANVASK GGNLMLNVGP DGEGNIPEYS VKFLKETGKW LDKNGESIYG STYGLIPAQP WGVSTSKPGK QYLHVMRRPL DGKLLIPDFK GKVAKVYNLV SQQQLSWKNT GKDIWIDLPV FEADAANTVV VVEYSGKIDD YDLKVPITVS GQYPENIVGA TYARLKGNAK IQSLTYSHYY GDWKHTVCVT DIKSNNDEAD FAIRVTEPGV YKIALEYSCA PESAKQEGSM TVNGQEFLFR TLRTSDFDKK APLPFIKHVI ATTTFSKAAD YQISIRPLQN GIELFKLKSV ILEPVK
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