| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2691 |
|---|
| Symbol | |
|---|
| ID | 8253799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3155192 |
|---|
| End bp | 3155755 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644936339 |
|---|
| Product | RNA polymerase sigma factor, sigma-70 family |
|---|
| Protein accession | YP_003092954 |
|---|
| Protein GI | 255532582 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00174233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCGA AATCAAATAC AGATGTTACA GGCAACGACC GGGAAGCATG GCTTACGGCA
TTGTATAAAA AGGCCTTTCC GCTGGTAGCA GGTCACATCA GCAAAATGGG CGGTTCACTG
GAGGAAGCCC GTGACATTTT CCAGGATGCA CTGATCATCT ATTACGAAAA ATCTACGGCT
TCAGTGCTGA CATTGAAGCA TAGCGATGAA GCCTATCTTT TTGGAATTGC CCGTTACCTT
TGGAACAAAC GGTATAAAGA AAGTTCGGGG CAATTGTCTA TAGATCAGTT GAATGCAGAT
TTTGATGAAC AGGCTGGTCT CACCGATACT GTTGAAGGGG AAATATCTAC TTCCCGTTTG
TTTAAGCTCC TGCAGACAGC TGGTCAGAAA TGTATGCAGC TGCTCAGTGC TTTTTATTAT
GAGAAACTCA GTATGGAGCA GCTTGCGGGA AGGTTTGGCT TTTCGGGGCC GAGGTCTGCC
ACCGCCCAGA AGTTCAAATG CCTGGAAAAA GTAAAGGAAA CGGTAAAAGA AAAATCAATA
CGCTATGAAG ACATCTTTGA ATGA
|
|---|
| Protein sequence | MDAKSNTDVT GNDREAWLTA LYKKAFPLVA GHISKMGGSL EEARDIFQDA LIIYYEKSTA
SVLTLKHSDE AYLFGIARYL WNKRYKESSG QLSIDQLNAD FDEQAGLTDT VEGEISTSRL
FKLLQTAGQK CMQLLSAFYY EKLSMEQLAG RFGFSGPRSA TAQKFKCLEK VKETVKEKSI
RYEDIFE
|
|---|
| |