| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2648 |
|---|
| Symbol | |
|---|
| ID | 8253755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3092003 |
|---|
| End bp | 3096094 |
|---|
| Gene Length | 4092 bp |
|---|
| Protein Length | 1363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644936295 |
|---|
| Product | response regulator receiver |
|---|
| Protein accession | YP_003092911 |
|---|
| Protein GI | 255532539 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTT ATTTCTTTTT TTGTGCCTTT CTTTTATTTG GATATTCCCA GTTCGCATTA
TCCCAAAATC TGGAAGGCAT GCCTGAAGAT TTTAAATTTC AGCACTTTAC ACCAGCCAAT
GGGTTGTCGC AAAGATCTGT GATGGCTATT TTGCAAGATA AAAAGGGGTA TTTATGGTTT
GGAACAAGAG ACGGACTTAA CCGCTTTGAT GGCAATAAGT TTATTGTTTA CCGGCATAAG
CTGACTGATC CGAAAAGTTT AAGCAACAAT AATATTCATT CTATTTATGA AGATAGCCAT
GGTAGTTTAT GGGTAGGCAC TCAGATAGGT TTAAATAAAT ATGATCCCAA AACTGATGGT
TTTGTCCGGT ATAAACAGGC TGATGCCCCG CATACGATTT CAGACAATGT TATCCGGGGA
ATTATACAGA TCACACATGA TCTGTTATGG GCGGCTACGG ATAATGGCAT CATTCAGATA
AATATCAAGA CGGATAAAAT TCAGAGAATA AAGAAAGTAG CTGGCAATTC CAATTCTTTA
AGTGACGATA AAATCAGGTA CTTTCTAAAA ACTAAGGACG GGAACATCTG GATCTGTAAC
ACGCGGTACA TTGATGTGTA TGATCCGCAG AAAAGAATGT TTAAGCGGAT TGATTATCCA
AAAAAAAATA GCAACAGTAC ACATCTCAAC GATCTTCCGA CGTTGTTTGT AGATCATAAA
AATTCAATGT GGCTGGGATA TGAACAGGGA CTGGCCATAT ATGATCCCCG GAAAGGAGTT
TTTTTGGATT TTGAGTTTAA CCATAAAAAG GCGGTTGCAG CAGCTGTTCG AAGTATTTGT
GAAGACCTGA GCGGCAGTTT GTGGATAGGA AGTTATTCGG GGCTTTACAT ATTGAATCCT
GAACGTTCTG ATTTGAAACA TATTGTGCAT GATGAGGATA ATTCAACCAG TTTAAGCCAA
AACTCTATCT ATAAAATTAT TCGTGATTCC AGAGGGGATA TGTGGCTGGG AACTTGGGCC
GATGGCCTTA ATTATTACAA CAGGGATAAC AGTGCTTTCA AAAATATTTC ATTCGGTAAT
ACGAGCAGTA AATTAAATTA TAAGGTAGTA AGCGGACTGG CAGAAGATTT GAACGGGAAT
TTGTGGATCG GTACGGAAGG AGGTGGTTTA AACTTCTACG ATAGAAAAAC AAAGAAGATC
AGCTATTATA AAAATAACCC CAATGATAAA AGCAGTTTAA GTGCCAATAA CGTAAAATCG
GTAATTATTG ACCGGAACGG ACTGATCTGG ATTGGAATTC ATGATGGTGG ATTGAATGTA
CTGGATCCAA AACAATTGCC GTTTAAGTTT CAACAAATTG ATTTTACAGA AAAGAATAAT
ATTTCCCTGA AAGCTTATAA GGTGTTGACG CTTTTAGAAG ATAAGCATGG AAATATCTGG
ATCGGAACAT TAACGGGAGG ATTGATTTTT TATGACGTAA AAAACAAACG GTTATCAAGA
ATTGATAAGG AGATCAGGAC GATTATGAGC ATTGTACAAA CACGGGACCC GGATGTATTA
CTGATAGGCG GCGATAATGG ACTTGAATCG ATAAATACAA AGATAGGAAG GATCAGTAAA
ATACCGCTTA AAAAGTCTTC AGAAGGAGAT TCTCAGCCTT ATGTAAACTG TATTTTTATT
GATAATTTTA ATAATTACTG GATAGGAACT GAAGGACAGG GCGTATTTAT GTACGATCCC
AAACGGAAAA AGACTAAAGC TTATGCGGTA AAGGATGGCT TACCAAATGA CATTATCTAC
GGCATCTTGT CTGACAATAA CGGGAACATA TGGATCAGTA GCAATAACGG AATCAGTCGC
TTGAATATAG AGTCTAATAA CATAAAAAAC TACAATCAGT CTGATGGAAT CCAGGGAAAT
GAATTTAATT ATGGTTCATT CTTTAAAACC AGAGAGAAGG AACTTTTTTT TGGAGGAACA
AATGGGCTGA CCTATTTTGA TCCGAATGAC ATTCGGAAAA ACACTTTTGT ACCCGCCATT
GACATCAATA ACATTGAAGT CAACAATATG CCTTATGCAA GAATAACTGA TGCCATTTCC
AGAATCAGCC TGAAGTATAA TGAAAATAAT TTCAGCATTG ACTTTACTGC TTTAAGCTAT
ATGTATCCGG AAAAAAATGA ATTTGCATTT ATATTGGAGG GAAATGATAA AAAATGGAAT
AATGTGGGGA ACCAGCGGAA AGCAATTTAT ACGAATATCA AGGAAGGGGA TTACGTATTT
AGGGTAAAAG GTACTAATAA TGATGGCGTT TGGAATGAAG TAGGGGATTC CATAAAGATT
AGTGTGCTAC CGGCACCATG GAAAACATGG TGGGCTTATC TATTTTATTT CGCATGTTGC
ACGGGTATAT TTCTGTACAT CAGGAAATTA ACCTTATCGG GGATACGGGA AAGAAAAGAA
AAAGAAAAAT CAGAACAAAT TAACCAGCTT AGGTTGAAAT TATTTACGGA TGTATCTCAT
GATTTCAGAA CGCCACTAAC GCTCATCATT GGCCCCCTTG AAAAAATGAT TGGTAAAAAT
GGTGGAGATC ATTACATCCG GAAGCAGCAC GAAGTGATGT TGAAAAATGC AAGGATGTTG
CTCCAATTGA TCAACCAGAT TTTAGATATC AGGAAAGTTG AGTCCGGGAA ACTTGTGCTC
CAGGCTTCGA AAAGTAACAT CGTTCCCTTT ATCGAAGAGG TCGGCAGGTC TTTTGATGCA
CTGGCGGAGA AAAAAAACAT TAGCTATCGG GTTACGGCTA GTGATGAGGA AATCCAGGTA
TGGTTTGACC AGGTCAAGCT TAAAAATATC CTGTATAATT TATTGTCTAA TGCTTTTAAA
TTTAGCCATG ATTATGGAGA AATATCGGTA CATATTTCCA CCATTTCAAA AAAGCAGGGT
TTAGCGTTAG TTGAATATGT TAAAATAAGT GTGGTAAATT TCGGTTACGT TATTCCTGAA
GGGCAAATTG ACCTTATTTT TGACCAGTTT TATCAGTTGG ACAATGATAA AAAGAGTTTA
GGCTCGGGGA TTGGCCTGTC GTTAATCAAA AGGCTTACAG AACTTCATAA GGGCGAAATC
TTTGTGAGCA GCTCTGCTGT TGGGGGCACA GATTTTAGTG TATTATTAAG GTTGGGAAAT
GGACATCTTT CTGAAAATGA ATGTGTAGCT GAGGCTGAAG CCAGTGACGA ACAGACTTTT
TATATAGACA GAGATCCGGC AGTTGTCCGG CAGCAAATTG AAGAGCCGGA AGTACCTATG
TCTATTGCTG GCTATAATGA CGAACTTCAA AGTTTGTTGA TTGTGGAGGA CAACCTGGAT
CTTCAGCATT TCATTAAGCA GATCTTTGTG CATAAATACA ATGTTTTTGT AGCTGAAAAC
GGAGAACAGG CAATAGAAAT TGCTAATCAG AATGTTATTG ATTTAATTAT CAGCGATGTA
CATATGCCTG TGATGGATGG TTTTGAATTG TGTCATCATG TGAAAACTAC GCTGATCATG
AGCCATATTC CGGTTATTCT GCTTACAGCA AAAACATCTT ATGTATACCA GGAAAAGGGA
TACGATACGG GAGCTGATGC TTACATTACC AAGCCATTTG ATGCGAATAT TCTTGAGGTC
AGGGTGGATA ATTTGCTGAA AACCAGATCG AATTTAATTC GTAAATTTAA AAAGGATGCC
ATTTTAGTAC CTAAAGAACT GACGGCAACC TCGCCTGATG AAGTGTTTTT GGGAAGGGCT
ATTGCGGTAG TGGAGCAAAA TATAGGAACT GAGGATTTTA ACGCCAGTAT GTTCATCAGC
GAGATGAATA TGAGCCGCAC GGTAATTTAC ACGAAATTAA AGGTGCTGAC GGGCCAGAAT
ATTTCTACGT TTATCAGAAC GATAAGGTTA AAGAAAGCGG GTCAGTTAAT TATTCAGACA
AGCATGAACA TTTCTGAAAT TGCGTATGAA GTTGGTTTCA ATGATTTGAA ATATTTCAGG
GAATGTTTTA AGGATTTTTT CAAATTAACT CCTTCCGAAT ATAAAAGGAA ACATATAAAG
GATAATTTGT AA
|
|---|
| Protein sequence | MKVYFFFCAF LLFGYSQFAL SQNLEGMPED FKFQHFTPAN GLSQRSVMAI LQDKKGYLWF
GTRDGLNRFD GNKFIVYRHK LTDPKSLSNN NIHSIYEDSH GSLWVGTQIG LNKYDPKTDG
FVRYKQADAP HTISDNVIRG IIQITHDLLW AATDNGIIQI NIKTDKIQRI KKVAGNSNSL
SDDKIRYFLK TKDGNIWICN TRYIDVYDPQ KRMFKRIDYP KKNSNSTHLN DLPTLFVDHK
NSMWLGYEQG LAIYDPRKGV FLDFEFNHKK AVAAAVRSIC EDLSGSLWIG SYSGLYILNP
ERSDLKHIVH DEDNSTSLSQ NSIYKIIRDS RGDMWLGTWA DGLNYYNRDN SAFKNISFGN
TSSKLNYKVV SGLAEDLNGN LWIGTEGGGL NFYDRKTKKI SYYKNNPNDK SSLSANNVKS
VIIDRNGLIW IGIHDGGLNV LDPKQLPFKF QQIDFTEKNN ISLKAYKVLT LLEDKHGNIW
IGTLTGGLIF YDVKNKRLSR IDKEIRTIMS IVQTRDPDVL LIGGDNGLES INTKIGRISK
IPLKKSSEGD SQPYVNCIFI DNFNNYWIGT EGQGVFMYDP KRKKTKAYAV KDGLPNDIIY
GILSDNNGNI WISSNNGISR LNIESNNIKN YNQSDGIQGN EFNYGSFFKT REKELFFGGT
NGLTYFDPND IRKNTFVPAI DINNIEVNNM PYARITDAIS RISLKYNENN FSIDFTALSY
MYPEKNEFAF ILEGNDKKWN NVGNQRKAIY TNIKEGDYVF RVKGTNNDGV WNEVGDSIKI
SVLPAPWKTW WAYLFYFACC TGIFLYIRKL TLSGIRERKE KEKSEQINQL RLKLFTDVSH
DFRTPLTLII GPLEKMIGKN GGDHYIRKQH EVMLKNARML LQLINQILDI RKVESGKLVL
QASKSNIVPF IEEVGRSFDA LAEKKNISYR VTASDEEIQV WFDQVKLKNI LYNLLSNAFK
FSHDYGEISV HISTISKKQG LALVEYVKIS VVNFGYVIPE GQIDLIFDQF YQLDNDKKSL
GSGIGLSLIK RLTELHKGEI FVSSSAVGGT DFSVLLRLGN GHLSENECVA EAEASDEQTF
YIDRDPAVVR QQIEEPEVPM SIAGYNDELQ SLLIVEDNLD LQHFIKQIFV HKYNVFVAEN
GEQAIEIANQ NVIDLIISDV HMPVMDGFEL CHHVKTTLIM SHIPVILLTA KTSYVYQEKG
YDTGADAYIT KPFDANILEV RVDNLLKTRS NLIRKFKKDA ILVPKELTAT SPDEVFLGRA
IAVVEQNIGT EDFNASMFIS EMNMSRTVIY TKLKVLTGQN ISTFIRTIRL KKAGQLIIQT
SMNISEIAYE VGFNDLKYFR ECFKDFFKLT PSEYKRKHIK DNL
|
|---|
| |