Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2609 |
Symbol | |
ID | 8253716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3055613 |
End bp | 3057349 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644936259 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_003092875 |
Protein GI | 255532503 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00973308 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.475535 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAT TCGAAATAAA AAAAACGGGT ATCGAGTACG ATGCCATTGT AGTAGGATCG GGTGCCGGCG GCGGAATGGC CGGATATGTA CTTGCCAATG CAGGCCTAAA GGTTTTAATG CTCGAAGCTG GTGCTTATTT TGATCCCCGT ATAGATTCCC AGCAATTAAA ATGGCCCTGG GAATCACCAA GAAGAGGTGC CAATACTATA CGGCCATTTG GTGATTTTGA CGGTTCTTAT GGTGGTTGGG AGCTGGAAGG AGAACCTTAT ACCCAAAAAA ATGATTCTGA ATTTGCATGG TACCGGTCAA GAATGCTTGG TGGACGTACC AACCACTGGG GACGCATTTC TTTAAGAATG GGCCCCGATG ATTTTAAACC GAAAGACGGA CTTACGGATG AATGGCCACT TACTTATCAG GAGTTAAAGC CATTTTATGA TAAGGTAGAC CGGATGATCG GTCTGTATGG TACGGTTGAA GGAATAGAAA GTGAACCTGA TGGTATTTTT ATGACACCAC CGAAGCCAAG GCTTAATGAA CTTTTTATTA AAAAGGCCGC GCAAAAGGTT GGCGTGAAAG TGATACCTGG CAGAGGTGCC GTACTAACGG AAGCTTTGTC CAATAATAAA GACCGTGCAC CTTGTTTTTA TTGCGGACAA TGTGGCCGGT CATGCAAGGT ATATGGCGAT TTTTCATCAT CATCCTGTTT GGTTATACCC GCAGTTCATA CAGGTAACCT GACAGTAATT ACCAATGCGA TGGTAAGGGA AGTCTTAACG GATAAAACTG GCCTGGCAAC TGGGGTATCT TATGTAAATA CCAAGGATAT GCAGGAGTAC CAGGTTCGTG GTAAAACTAT TATTTTGGGT GCCAGTGCTT GTGAATCTGC ACGCTTGCTG CTCAATTCCA GATCAGTTGC CCATCCGGAT GGTTTGGCGA ATAATAGTGG GGTGGTAGGG AAATACCTTC ACGATTCTAC CGGTGCCAGT ATGGGTGGTT ATTTGCCGCA GTTGCTGGAC CGGAAAAGGT ATAATGAAGA TGGTGCAGGT AGTGTGCATA TCTATTCTCC ATGGTGGCTG GACAACAAGA AGCTTGATTT TCCGCGGGGT TATCACATAG AATATGGTGG TGGATTTGGA ATTCCTGGTT ATAACTTTGG CTGGGGGATG GAAAAGAAAA ATGGAACAGT ACCGGGTAGG GATGGAAAGA TGAAACCAGC GGGCGGATAT GGTACAGGTC TGAAGGACGA TTATCGTCGT TTTTTTGGCA GTGGGGTGTG GATGGCGGGC AGGGGGACAG CCATTGCCAG GGAAAGCAAT TATTGTGAAA TAGATCCCAA GGTGGTAGAT AAATACGGTA TCCCTGTACT TCGGTTCAAT TATAAATGGG CACCTGAAGA AGTGAAGCAG GCAAGGCACA TGCAGGAAAC GTTTAAAGAG ATTATGCATG CAATGGGGGC TGTTGCAAAT GAGCCCCCTG GTGCGGATAC CAATTATGGT TTGGAGGCAC CAGGTAAAAT TATCCATGAG GTAGGAACGG TAAGAATGGG CGATGACCCA AAAAAATCTG CCTTAAACAG GTGGTGTCAG GCGCATGATT GTAAAAATCT ATTTGTAGTA GATGCTGCTC CTTTTGTTCA ACAGGGCGAT AAAAACGCAA CCTGGACTAT TTTAGCCTTG TCTATGCGTA CTGCTGAATA TATTTTGCAG CAAAAAGAAA AATTAAACAT TAGCTGA
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Protein sequence | MNEFEIKKTG IEYDAIVVGS GAGGGMAGYV LANAGLKVLM LEAGAYFDPR IDSQQLKWPW ESPRRGANTI RPFGDFDGSY GGWELEGEPY TQKNDSEFAW YRSRMLGGRT NHWGRISLRM GPDDFKPKDG LTDEWPLTYQ ELKPFYDKVD RMIGLYGTVE GIESEPDGIF MTPPKPRLNE LFIKKAAQKV GVKVIPGRGA VLTEALSNNK DRAPCFYCGQ CGRSCKVYGD FSSSSCLVIP AVHTGNLTVI TNAMVREVLT DKTGLATGVS YVNTKDMQEY QVRGKTIILG ASACESARLL LNSRSVAHPD GLANNSGVVG KYLHDSTGAS MGGYLPQLLD RKRYNEDGAG SVHIYSPWWL DNKKLDFPRG YHIEYGGGFG IPGYNFGWGM EKKNGTVPGR DGKMKPAGGY GTGLKDDYRR FFGSGVWMAG RGTAIARESN YCEIDPKVVD KYGIPVLRFN YKWAPEEVKQ ARHMQETFKE IMHAMGAVAN EPPGADTNYG LEAPGKIIHE VGTVRMGDDP KKSALNRWCQ AHDCKNLFVV DAAPFVQQGD KNATWTILAL SMRTAEYILQ QKEKLNIS
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