Gene Phep_2609 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2609 
Symbol 
ID8253716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3055613 
End bp3057349 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content45% 
IMG OID644936259 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_003092875 
Protein GI255532503 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00973308 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.475535 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAAT TCGAAATAAA AAAAACGGGT ATCGAGTACG ATGCCATTGT AGTAGGATCG 
GGTGCCGGCG GCGGAATGGC CGGATATGTA CTTGCCAATG CAGGCCTAAA GGTTTTAATG
CTCGAAGCTG GTGCTTATTT TGATCCCCGT ATAGATTCCC AGCAATTAAA ATGGCCCTGG
GAATCACCAA GAAGAGGTGC CAATACTATA CGGCCATTTG GTGATTTTGA CGGTTCTTAT
GGTGGTTGGG AGCTGGAAGG AGAACCTTAT ACCCAAAAAA ATGATTCTGA ATTTGCATGG
TACCGGTCAA GAATGCTTGG TGGACGTACC AACCACTGGG GACGCATTTC TTTAAGAATG
GGCCCCGATG ATTTTAAACC GAAAGACGGA CTTACGGATG AATGGCCACT TACTTATCAG
GAGTTAAAGC CATTTTATGA TAAGGTAGAC CGGATGATCG GTCTGTATGG TACGGTTGAA
GGAATAGAAA GTGAACCTGA TGGTATTTTT ATGACACCAC CGAAGCCAAG GCTTAATGAA
CTTTTTATTA AAAAGGCCGC GCAAAAGGTT GGCGTGAAAG TGATACCTGG CAGAGGTGCC
GTACTAACGG AAGCTTTGTC CAATAATAAA GACCGTGCAC CTTGTTTTTA TTGCGGACAA
TGTGGCCGGT CATGCAAGGT ATATGGCGAT TTTTCATCAT CATCCTGTTT GGTTATACCC
GCAGTTCATA CAGGTAACCT GACAGTAATT ACCAATGCGA TGGTAAGGGA AGTCTTAACG
GATAAAACTG GCCTGGCAAC TGGGGTATCT TATGTAAATA CCAAGGATAT GCAGGAGTAC
CAGGTTCGTG GTAAAACTAT TATTTTGGGT GCCAGTGCTT GTGAATCTGC ACGCTTGCTG
CTCAATTCCA GATCAGTTGC CCATCCGGAT GGTTTGGCGA ATAATAGTGG GGTGGTAGGG
AAATACCTTC ACGATTCTAC CGGTGCCAGT ATGGGTGGTT ATTTGCCGCA GTTGCTGGAC
CGGAAAAGGT ATAATGAAGA TGGTGCAGGT AGTGTGCATA TCTATTCTCC ATGGTGGCTG
GACAACAAGA AGCTTGATTT TCCGCGGGGT TATCACATAG AATATGGTGG TGGATTTGGA
ATTCCTGGTT ATAACTTTGG CTGGGGGATG GAAAAGAAAA ATGGAACAGT ACCGGGTAGG
GATGGAAAGA TGAAACCAGC GGGCGGATAT GGTACAGGTC TGAAGGACGA TTATCGTCGT
TTTTTTGGCA GTGGGGTGTG GATGGCGGGC AGGGGGACAG CCATTGCCAG GGAAAGCAAT
TATTGTGAAA TAGATCCCAA GGTGGTAGAT AAATACGGTA TCCCTGTACT TCGGTTCAAT
TATAAATGGG CACCTGAAGA AGTGAAGCAG GCAAGGCACA TGCAGGAAAC GTTTAAAGAG
ATTATGCATG CAATGGGGGC TGTTGCAAAT GAGCCCCCTG GTGCGGATAC CAATTATGGT
TTGGAGGCAC CAGGTAAAAT TATCCATGAG GTAGGAACGG TAAGAATGGG CGATGACCCA
AAAAAATCTG CCTTAAACAG GTGGTGTCAG GCGCATGATT GTAAAAATCT ATTTGTAGTA
GATGCTGCTC CTTTTGTTCA ACAGGGCGAT AAAAACGCAA CCTGGACTAT TTTAGCCTTG
TCTATGCGTA CTGCTGAATA TATTTTGCAG CAAAAAGAAA AATTAAACAT TAGCTGA
 
Protein sequence
MNEFEIKKTG IEYDAIVVGS GAGGGMAGYV LANAGLKVLM LEAGAYFDPR IDSQQLKWPW 
ESPRRGANTI RPFGDFDGSY GGWELEGEPY TQKNDSEFAW YRSRMLGGRT NHWGRISLRM
GPDDFKPKDG LTDEWPLTYQ ELKPFYDKVD RMIGLYGTVE GIESEPDGIF MTPPKPRLNE
LFIKKAAQKV GVKVIPGRGA VLTEALSNNK DRAPCFYCGQ CGRSCKVYGD FSSSSCLVIP
AVHTGNLTVI TNAMVREVLT DKTGLATGVS YVNTKDMQEY QVRGKTIILG ASACESARLL
LNSRSVAHPD GLANNSGVVG KYLHDSTGAS MGGYLPQLLD RKRYNEDGAG SVHIYSPWWL
DNKKLDFPRG YHIEYGGGFG IPGYNFGWGM EKKNGTVPGR DGKMKPAGGY GTGLKDDYRR
FFGSGVWMAG RGTAIARESN YCEIDPKVVD KYGIPVLRFN YKWAPEEVKQ ARHMQETFKE
IMHAMGAVAN EPPGADTNYG LEAPGKIIHE VGTVRMGDDP KKSALNRWCQ AHDCKNLFVV
DAAPFVQQGD KNATWTILAL SMRTAEYILQ QKEKLNIS