| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2597 |
|---|
| Symbol | |
|---|
| ID | 8253704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3035687 |
|---|
| End bp | 3036853 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644936247 |
|---|
| Product | Mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_003092863 |
|---|
| Protein GI | 255532491 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.598556 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.375027 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA CTGAGATCAA AACCTTTATT TGCCATTCAT ACCGAACAAA CTGGGTGTTT
GTAAAAGTAA TTACTGATTC GGGCCTGCAT GGCGTAGGCG AGGCAACACT GGAAATGAAA
GAATTGACTG TGTTGCAGGC CGTAAATGAA TTAAAAAGAT ATTTAATAGG AAAAGACCCT
CACCAGATAG AAGCCATCTG GCACGATTGC TATCGAGATG CCTACTGGCG GGGCGGGGTT
GTTTTAATGA GCGCACTGGC CGCTATAGAT ATGGCTTTGT GGGACATCAA AGGCAAAGAC
CTTGGTGTAC CGGTATACCA GTTGCTTGGA GGAAAGGTAA GAGATGCCGT ACCATGTTAT
GCGAATGGGT GGTTTGCCCC TGCAAAAACC CCTGAAGAGT TTGCCGAAAA AGCAAAGGAG
GCCGTAAAAA TCGGTTTTAA AGGTTTAAAA TGGGACCCAT TCGGATCGGC CTATATGAAC
CTGACCAAAA AAGAGTTTTC TTATGCTTTG GCTTGCATTG ATGCTGTTGT TAATGCTGTA
GGAACAGAGA TTGACATCTT AATTGAAGGG CATGGCCGTT TTAACATGCC AACTGCTATA
AGGGTAGCCC ATGCCCTTGA AGACTTTGAC ATTACCTGGT TTGAAGAACC TATTCCCCCT
GATCATATGG AGGGACTGGC GCAATTAAGA AGAAAAACCA AGGTGCCTAT TGCAGCCGGC
GAGCGTCTTT ACAGCAGATG GGATTACAGA AGTTTTCTAA ACCAGGAATG CGCAGATTTT
ATCCAGCCTG ATGTAAGTCA TGCTGGTGGT ATATCAGAAC TTAAAAAGAT TGCTGCTATG
GCCGAATGCT ATTACATTCC GCTTTGTCCG CATAACCCGA GTGGCCCTGT AGCTAACGCT
GCCACACTTC ATATTGCTGC ATCTACACCA AATTTCCATT TCCTTGAAAC GATGAGCAGT
GACGTTCCTT ACCGCAATAA AATAAGTACC GAAAAAGTTG AATTTATAGA CGGAATGATG
CAAATTAACA ACTTGCCCGG CCTTGGAATA GACATTAACG AAGAAGCAAT TGTGGCTTAC
CCTTATGAGC CGAGGGACTT GCGACATTAC AATGGGAAGT TAACCGAAAT ACGCCCGGAA
AATGCAAAGG GCTATTTTGC AAAGTAA
|
|---|
| Protein sequence | MKITEIKTFI CHSYRTNWVF VKVITDSGLH GVGEATLEMK ELTVLQAVNE LKRYLIGKDP
HQIEAIWHDC YRDAYWRGGV VLMSALAAID MALWDIKGKD LGVPVYQLLG GKVRDAVPCY
ANGWFAPAKT PEEFAEKAKE AVKIGFKGLK WDPFGSAYMN LTKKEFSYAL ACIDAVVNAV
GTEIDILIEG HGRFNMPTAI RVAHALEDFD ITWFEEPIPP DHMEGLAQLR RKTKVPIAAG
ERLYSRWDYR SFLNQECADF IQPDVSHAGG ISELKKIAAM AECYYIPLCP HNPSGPVANA
ATLHIAASTP NFHFLETMSS DVPYRNKIST EKVEFIDGMM QINNLPGLGI DINEEAIVAY
PYEPRDLRHY NGKLTEIRPE NAKGYFAK
|
|---|
| |