Gene Phep_2577 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2577 
Symbol 
ID8253684 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3001730 
End bp3002512 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content45% 
IMG OID644936227 
ProductABC transporter related 
Protein accessionYP_003092843 
Protein GI255532471 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.993808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAAAG CGTCGACAGT AAAGATTGAT AAAGCGTTAA TCAACATTAA AGATATTGGT 
CGTAAATATG TCATCGGTTC TGAAGTGATC CATGCATTGA AATCGGTTAC ACTTGATATT
CATAAAGGAG AGTTTGTAGC GTTGATGGGG CCTTCTGGTT CAGGGAAATC TACCCTCATG
AATATTTTAG GCTGTTTGGA TACACCCAGC AAGGGACATT ATGTATTAAA CGGTACCAAT
GTAAGCCACA TGTCAGACAA TGAGCTGGCC GAGGTCCGAA ATAAGGAGAT CGGTTTTGTA
TTTCAAACCT TTAACCTGCT GCCCCGTTCC ACCTCGCTGG ATAATGTCGC CCTGCCGCTG
ATCTATGCGG GTGCCAATAA AAAAGAACGT GAAGCACGTG CATATAAAGC ATTGGAGAAC
GTAGGATTGG GTAACCGCGT AACCCACAAG CCCAATGAGT TATCGGGCGG GCAGCGTCAG
CGGGTTGCTG TTGCCAGGGC ACTCATCAAT AACCCCTCCA TTATTCTGGC CGATGAGCCT
ACCGGAAACC TGGACACCAA AACTTCCATC GAGATCATGG GACTGCTGGA AGAGATCCAC
AGCAAAGGAA ATACCATTAT TCTTGTAACG CATGAAGAGG ACATAGCCCA GCATGCACAC
CGTATTGTAA GGATGCGGGA CGGACTGATC GAGAAGGATT ATCAAAATAC AGATGTCAAA
ACAGTTTCTC CACGTTTATC CGGATTAAAG GAAAAAGGTG ATGACTTTGA AAAGATAAAT
TGA
 
Protein sequence
MEKASTVKID KALINIKDIG RKYVIGSEVI HALKSVTLDI HKGEFVALMG PSGSGKSTLM 
NILGCLDTPS KGHYVLNGTN VSHMSDNELA EVRNKEIGFV FQTFNLLPRS TSLDNVALPL
IYAGANKKER EARAYKALEN VGLGNRVTHK PNELSGGQRQ RVAVARALIN NPSIILADEP
TGNLDTKTSI EIMGLLEEIH SKGNTIILVT HEEDIAQHAH RIVRMRDGLI EKDYQNTDVK
TVSPRLSGLK EKGDDFEKIN