Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2577 |
Symbol | |
ID | 8253684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3001730 |
End bp | 3002512 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644936227 |
Product | ABC transporter related |
Protein accession | YP_003092843 |
Protein GI | 255532471 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.993808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGAAAG CGTCGACAGT AAAGATTGAT AAAGCGTTAA TCAACATTAA AGATATTGGT CGTAAATATG TCATCGGTTC TGAAGTGATC CATGCATTGA AATCGGTTAC ACTTGATATT CATAAAGGAG AGTTTGTAGC GTTGATGGGG CCTTCTGGTT CAGGGAAATC TACCCTCATG AATATTTTAG GCTGTTTGGA TACACCCAGC AAGGGACATT ATGTATTAAA CGGTACCAAT GTAAGCCACA TGTCAGACAA TGAGCTGGCC GAGGTCCGAA ATAAGGAGAT CGGTTTTGTA TTTCAAACCT TTAACCTGCT GCCCCGTTCC ACCTCGCTGG ATAATGTCGC CCTGCCGCTG ATCTATGCGG GTGCCAATAA AAAAGAACGT GAAGCACGTG CATATAAAGC ATTGGAGAAC GTAGGATTGG GTAACCGCGT AACCCACAAG CCCAATGAGT TATCGGGCGG GCAGCGTCAG CGGGTTGCTG TTGCCAGGGC ACTCATCAAT AACCCCTCCA TTATTCTGGC CGATGAGCCT ACCGGAAACC TGGACACCAA AACTTCCATC GAGATCATGG GACTGCTGGA AGAGATCCAC AGCAAAGGAA ATACCATTAT TCTTGTAACG CATGAAGAGG ACATAGCCCA GCATGCACAC CGTATTGTAA GGATGCGGGA CGGACTGATC GAGAAGGATT ATCAAAATAC AGATGTCAAA ACAGTTTCTC CACGTTTATC CGGATTAAAG GAAAAAGGTG ATGACTTTGA AAAGATAAAT TGA
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Protein sequence | MEKASTVKID KALINIKDIG RKYVIGSEVI HALKSVTLDI HKGEFVALMG PSGSGKSTLM NILGCLDTPS KGHYVLNGTN VSHMSDNELA EVRNKEIGFV FQTFNLLPRS TSLDNVALPL IYAGANKKER EARAYKALEN VGLGNRVTHK PNELSGGQRQ RVAVARALIN NPSIILADEP TGNLDTKTSI EIMGLLEEIH SKGNTIILVT HEEDIAQHAH RIVRMRDGLI EKDYQNTDVK TVSPRLSGLK EKGDDFEKIN
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